{
    "type": "genome",
    "identifier": "GCA_902759175.1",
    "organism": "uncultured Ruminococcus sp.",
    "title": "uncultured Ruminococcus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902759175.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6148565",
        "wgs_master": "CACWBQ000000000.1",
        "refseq_category": "na",
        "taxid": "165186",
        "species_taxid": "165186",
        "organism_name": "uncultured Ruminococcus sp.",
        "infraspecific_name": "",
        "isolate": "RUG10432",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG10432",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/759/175/GCA_902759175.1_Rumen_uncultured_genome_RUG10432",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Ruminococcus sp."
        ],
        "sample_taxid": [
            "165186"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.658 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 81.77,
        "contamination": 6.25,
        "strain_heterogeneity": 33.33,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2316940",
        "Number of Sequences": "271",
        "Longest Sequences (bp)": "62178",
        "N50 (bp)": "13785",
        "Gap Ratio (%)": "0.014933",
        "GCcontent (%)": "53.6",
        "Number of CDSs": "1940",
        "Average Protein Length": "311.6",
        "Coding Ratio (%)": "78.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "18",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ruminococcus bromii",
                "strain": "strain=ATCC 27255",
                "accession": "GCA_002834225.1",
                "taxid": 40518,
                "species_taxid": 40518,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.9495,
                "matched_fragments": 57,
                "total_fragments": 623,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 81.77,
            "contamination": 6.25,
            "strain_heterogeneity": 33.33
        },
        "gtdb_result": [
            {
                "accession": "GCA_900100595.1",
                "gtdb_species": "s__Ruminococcus_E sp900100595",
                "ani": 98.5683,
                "matched_fragments": 532,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
                "min_intra_species_ani": "97.87",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 34,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016680995.1",
                "gtdb_species": "s__Ruminococcus_E sp016680995",
                "ani": 84.2793,
                "matched_fragments": 231,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900320415.1",
                "gtdb_species": "s__Ruminococcus_E sp900320415",
                "ani": 82.8038,
                "matched_fragments": 283,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.69",
                "min_intra_species_ani": "99.69",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900316555.1",
                "gtdb_species": "s__Ruminococcus_E sp900316555",
                "ani": 81.4824,
                "matched_fragments": 317,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "96.62",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 62,
                "status": "-"
            },
            {
                "accession": "GCA_902784855.1",
                "gtdb_species": "s__Ruminococcus_E sp902784855",
                "ani": 80.7888,
                "matched_fragments": 274,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018918205.1",
                "gtdb_species": "s__Ruminococcus_E sp018918205",
                "ani": 80.7703,
                "matched_fragments": 274,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902765625.1",
                "gtdb_species": "s__Ruminococcus_E sp902765625",
                "ani": 80.7661,
                "matched_fragments": 323,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "99.27",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_900316815.1",
                "gtdb_species": "s__Ruminococcus_E sp900316815",
                "ani": 80.4251,
                "matched_fragments": 233,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.08",
                "min_intra_species_ani": "98.49",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_902761375.1",
                "gtdb_species": "s__Ruminococcus_E sp902761375",
                "ani": 80.1683,
                "matched_fragments": 217,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900317595.1",
                "gtdb_species": "s__Ruminococcus_E sp900317595",
                "ani": 79.2193,
                "matched_fragments": 222,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.55",
                "min_intra_species_ani": "99.10",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902764715.1",
                "gtdb_species": "s__Ruminococcus_E sp902764715",
                "ani": 79.2061,
                "matched_fragments": 111,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900315085.1",
                "gtdb_species": "s__Ruminococcus_E sp900315085",
                "ani": 78.5997,
                "matched_fragments": 181,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "97.96",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 11,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.18,
        "cell_length": -0.18,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.7,
        "optimum_ph": 7.0,
        "genome_size": 3334855.36,
        "gc_content": 43.875,
        "coding_genes": 2772.666,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 64.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__Ruminococcus_E",
        "s__Ruminococcus_E sp900100595"
    ],
    "_genome_taxon": [
        "uncultured",
        "Ruminococcus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__Ruminococcus_E",
        "s__Ruminococcus_E sp900100595",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Acutalibacteraceae",
        "Ruminococcus",
        "E",
        "Ruminococcus",
        "E",
        "sp900100595"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}