{ "type": "genome", "identifier": "GCA_902759295.1", "organism": "uncultured Sutterellaceae bacterium", "title": "uncultured Sutterellaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902759295.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6148584", "wgs_master": "CACWCG000000000.1", "refseq_category": "na", "taxid": "1229253", "species_taxid": "1229253", "organism_name": "uncultured Sutterellaceae bacterium", "infraspecific_name": "", "isolate": "RUG10451", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/15", "asm_name": "Rumen uncultured genome RUG10451", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/759/295/GCA_902759295.1_Rumen_uncultured_genome_RUG10451", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-15", "dateModified": "2020-02-15", "datePublished": "2020-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Sutterellaceae bacterium" ], "sample_taxid": [ "1229253" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.619 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 9.99, "strain_heterogeneity": 18.75, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2189629", "Number of Sequences": "161", "Longest Sequences (bp)": "109515", "N50 (bp)": "24514", "Gap Ratio (%)": "0.005389", "GCcontent (%)": "60.3", "Number of CDSs": "1819", "Average Protein Length": "330.8", "Coding Ratio (%)": "82.4", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Duodenibacillus massiliensis", "strain": "strain=Marseille-P2968", "accession": "GCA_900128485.1", "taxid": 1852381, "species_taxid": 1852381, "relation_to_type": "type", "validated": true, "ani": 78.1901, "matched_fragments": 128, "total_fragments": 646, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutterella megalosphaeroides", "strain": "strain=6FBBBH3", "accession": "GCA_003609995.1", "taxid": 2494234, "species_taxid": 2494234, "relation_to_type": "type", "validated": true, "ani": 77.4421, "matched_fragments": 100, "total_fragments": 646, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutterella faecalis", "strain": "strain=KGMB03119", "accession": "GCA_006337085.1", "taxid": 2584944, "species_taxid": 2584944, "relation_to_type": "type", "validated": true, "ani": 77.3351, "matched_fragments": 108, "total_fragments": 646, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutterella wadsworthensis", "strain": "strain=FDAARGOS_1159", "accession": "GCA_016724805.1", "taxid": 40545, "species_taxid": 40545, "relation_to_type": "type", "validated": true, "ani": 77.0789, "matched_fragments": 51, "total_fragments": 646, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter aquaticus", "strain": "strain=LMG 30558", "accession": "GCA_015159745.1", "taxid": 2780094, "species_taxid": 2780094, "relation_to_type": "type", "validated": true, "ani": 76.8941, "matched_fragments": 54, "total_fragments": 646, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verticiella sediminum", "strain": "strain=DSM 27279", "accession": "GCA_007558815.1", "taxid": 1247510, "species_taxid": 1247510, "relation_to_type": "type", "validated": true, "ani": 76.676, "matched_fragments": 62, "total_fragments": 646, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella defragrans", "strain": "strain=CCUG 39790", "accession": "GCA_008801975.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 76.648, "matched_fragments": 52, "total_fragments": 646, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella defragrans", "strain": "strain=DSM 12141", "accession": "GCA_014203015.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 76.6332, "matched_fragments": 51, "total_fragments": 646, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea pulmonicola", "strain": "strain=DSM 16583", "accession": "GCA_000815105.2", "taxid": 93221, "species_taxid": 93221, "relation_to_type": "type", "validated": true, "ani": 76.5274, "matched_fragments": 52, "total_fragments": 646, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea pulmonicola", "strain": "strain=NCTC13159", "accession": "GCA_900454575.1", "taxid": 93221, "species_taxid": 93221, "relation_to_type": "type", "validated": true, "ani": 76.5247, "matched_fragments": 51, "total_fragments": 646, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia ferrariae", "strain": "strain=NBRC 106233", "accession": "GCA_000685035.1", "taxid": 386056, "species_taxid": 386056, "relation_to_type": "type", "validated": true, "ani": 76.3978, "matched_fragments": 63, "total_fragments": 646, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter ruhlandii", "strain": "strain=LMG 1866", "accession": "GCA_902859695.1", "taxid": 72557, "species_taxid": 72557, "relation_to_type": "type", "validated": true, "ani": 76.1166, "matched_fragments": 64, "total_fragments": 646, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella pertussis", "strain": "strain=18323", "accession": "GCA_000306945.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 76.081, "matched_fragments": 57, "total_fragments": 646, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella pertussis", "strain": "strain=FDAARGOS_1543", "accession": "GCA_020736265.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 76.0279, "matched_fragments": 59, "total_fragments": 646, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=FDAARGOS_1541", "accession": "GCA_020735925.1", "taxid": 519, 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