{ "type": "genome", "identifier": "GCA_902759685.1", "organism": "uncultured Lachnospiraceae bacterium", "title": "uncultured Lachnospiraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902759685.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6148621", "wgs_master": "CACWDS000000000.1", "refseq_category": "na", "taxid": "297314", "species_taxid": "297314", "organism_name": "uncultured Lachnospiraceae bacterium", "infraspecific_name": "", "isolate": "RUG10488", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/17", "asm_name": "Rumen uncultured genome RUG10488", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/759/685/GCA_902759685.1_Rumen_uncultured_genome_RUG10488", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-17", "dateModified": "2020-02-17", "datePublished": "2020-02-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lachnospiraceae bacterium" ], "sample_taxid": [ "297314" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.741 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2657126", "Number of Sequences": "124", "Longest Sequences (bp)": "142575", "N50 (bp)": "40527", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.4", "Number of CDSs": "2361", "Average Protein Length": "319.4", "Coding Ratio (%)": "85.1", "Number of rRNAs": "0", "Number of tRNAs": "29", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Eubacterium ventriosum", "strain": "strain=ATCC 27560", "accession": "GCA_025150745.1", "taxid": 39496, "species_taxid": 39496, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8544, "matched_fragments": 91, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyrivibrio crossotus", "strain": "strain=DSM 2876", "accession": "GCA_000156015.1", "taxid": 45851, "species_taxid": 45851, "relation_to_type": "type", "validated": true, "ani": 77.5625, "matched_fragments": 80, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyrivibrio crossotus", "strain": "strain=DSM 2876", "accession": "GCA_025148445.1", "taxid": 45851, "species_taxid": 45851, "relation_to_type": "type", "validated": true, "ani": 77.4922, "matched_fragments": 80, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnospira eligens", "strain": "strain=ATCC 27750", "accession": "GCA_000146185.1", "taxid": 39485, "species_taxid": 39485, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9508, "matched_fragments": 84, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia inulinivorans", "strain": "strain=DSM 16841", "accession": "GCA_000174195.1", "taxid": 360807, "species_taxid": 360807, "relation_to_type": "suspected-type", "validated": true, "ani": 76.839, "matched_fragments": 50, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnospira multipara", "strain": "strain=ATCC 19207", "accession": "GCA_000424105.1", "taxid": 28051, "species_taxid": 28051, "relation_to_type": "type", "validated": true, "ani": 76.7539, "matched_fragments": 50, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerosporobacter faecicola", "strain": "strain=KCTC 15857", "accession": "GCA_012070565.1", "taxid": 2718714, "species_taxid": 2718714, "relation_to_type": "type", "validated": true, "ani": 76.5493, "matched_fragments": 66, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerosporobacter mobilis", "strain": "strain=DSM 15930", "accession": "GCA_900142955.1", "taxid": 264463, "species_taxid": 264463, "relation_to_type": "type", "validated": true, "ani": 75.9928, "matched_fragments": 62, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" } 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