{
    "type": "genome",
    "identifier": "GCA_902761075.1",
    "organism": "Oscillospiraceae bacterium",
    "title": "Oscillospiraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902761075.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6148751",
        "wgs_master": "CACWIZ000000000.1",
        "refseq_category": "na",
        "taxid": "2485925",
        "species_taxid": "2485925",
        "organism_name": "Oscillospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "RUG10618",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/17",
        "asm_name": "Rumen uncultured genome RUG10618",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/761/075/GCA_902761075.1_Rumen_uncultured_genome_RUG10618",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-17",
    "dateModified": "2020-02-17",
    "datePublished": "2020-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oscillospiraceae bacterium"
        ],
        "sample_taxid": [
            "2485925"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.941 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 81.25,
        "contamination": 5.32,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3311123",
        "Number of Sequences": "221",
        "Longest Sequences (bp)": "111478",
        "N50 (bp)": "25946",
        "Gap Ratio (%)": "0.005134",
        "GCcontent (%)": "57.5",
        "Number of CDSs": "2827",
        "Average Protein Length": "318.0",
        "Coding Ratio (%)": "81.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "taxid": 2093857,
                "species_taxid": 2093857,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 71,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysosmobacter acutus",
                "strain": "strain=MSJ-2",
                "accession": "GCA_018919205.1",
                "taxid": 2841504,
                "species_taxid": 2841504,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoflavonifractor gallinarum",
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                "accession": "GCA_014982855.1",
                "taxid": 2779352,
                "species_taxid": 2779352,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8786,
                "matched_fragments": 81,
                "total_fragments": 989,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavonifractor plautii",
                "strain": "strain=JCM 32125",
                "accession": "GCA_010508875.1",
                "taxid": 292800,
                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.7776,
                "matched_fragments": 93,
                "total_fragments": 989,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium phoceensis",
                "strain": "strain=GD3",
                "accession": "GCA_001244495.1",
                "taxid": 1650661,
                "species_taxid": 1650661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7504,
                "matched_fragments": 66,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavonifractor plautii",
                "strain": "strain=ATCC 29863",
                "accession": "GCA_000239295.1",
                "taxid": 292800,
                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.7473,
                "matched_fragments": 88,
                "total_fragments": 989,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium prausnitzii",
                "strain": "strain=ATCC 27768",
                "accession": "GCA_003324185.1",
                "taxid": 853,
                "species_taxid": 853,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.6987,
                "matched_fragments": 60,
                "total_fragments": 989,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinimonas butyriciproducens",
                "strain": "strain=DSM 26588",
                "accession": "GCA_024622565.1",
                "taxid": 1297617,
                "species_taxid": 1297617,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5905,
                "matched_fragments": 54,
                "total_fragments": 989,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium hattorii",
                "strain": "strain=APC922/41-1",
                "accession": "GCA_003287455.1",
                "taxid": 2935520,
                "species_taxid": 2935520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5641,
                "matched_fragments": 65,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinimonas butyriciproducens",
                "strain": "strain=DSM 26588",
                "accession": "GCA_003096335.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5141,
                "matched_fragments": 56,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporobacter termitidis",
                "strain": "strain=DSM 10068",
                "accession": "GCA_900130065.1",
                "taxid": 44749,
                "species_taxid": 44749,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1442,
                "matched_fragments": 61,
                "total_fragments": 989,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 5.32,
            "strain_heterogeneity": 100.0
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        "gtdb_result": [
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                "accession": "GCA_900321275.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.70",
                "min_intra_species_ani": "95.66",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902789745.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_902790375.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_900319695.1",
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                "status": "-"
            },
            {
                "accession": "GCA_902761635.1",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_902791215.1",
                "gtdb_species": "s__Limivicinus sp902791215",
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            },
            {
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                "num_clustered_genomes": 4,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.397,
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        "growth_tmp": 30.0,
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        "tRNA_genes": 61.0,
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        "Bacteria",
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    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
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    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}