{ "type": "genome", "identifier": "GCA_902763085.1", "organism": "Selenomonas bovis", "title": "Selenomonas bovis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902763085.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6148971", "wgs_master": "CACWQW000000000.1", "refseq_category": "na", "taxid": "416586", "species_taxid": "416586", "organism_name": "Selenomonas bovis", "infraspecific_name": "", "isolate": "RUG10837", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/15", "asm_name": "Rumen uncultured genome RUG10837", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "GCF_902763085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/763/085/GCA_902763085.1_Rumen_uncultured_genome_RUG10837", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-15", "dateModified": "2020-02-15", "datePublished": "2020-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Selenomonas bovis" ], "sample_taxid": [ "416586" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.609 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 78.12, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2186128", "Number of Sequences": "104", "Longest Sequences (bp)": "94628", "N50 (bp)": "33307", "Gap Ratio (%)": "0.000961", "GCcontent (%)": "61.7", "Number of CDSs": "1993", "Average Protein Length": "310.6", "Coding Ratio (%)": "84.9", "Number of rRNAs": "1", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mitsuokella jalaludinii", "strain": "strain=DSM 13811", "accession": "GCA_000702905.1", "taxid": 187979, "species_taxid": 187979, "relation_to_type": "type", "validated": true, "ani": 80.9232, "matched_fragments": 327, "total_fragments": 675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mitsuokella multacida", "strain": "strain=DSM 20544", "accession": "GCA_000155955.1", "taxid": 52226, "species_taxid": 52226, "relation_to_type": "type", "validated": true, "ani": 80.8518, "matched_fragments": 330, "total_fragments": 675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Selenomonas sputigena", "strain": "strain=ATCC 35185", "accession": "GCA_000208405.1", "taxid": 69823, "species_taxid": 69823, "relation_to_type": "neotype", "validated": true, "ani": 78.2017, "matched_fragments": 231, "total_fragments": 675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Selenomonas sputigena", "strain": "strain=ATCC 35185", "accession": "GCA_000160495.1", "taxid": 69823, "species_taxid": 69823, "relation_to_type": "neotype", "validated": true, "ani": 78.1589, "matched_fragments": 230, "total_fragments": 675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Selenomonas montiformis", "strain": "strain=WCA-380-WT-3B3", "accession": "GCA_009697385.1", "taxid": 2652285, "species_taxid": 2652285, "relation_to_type": "type", "validated": true, "ani": 78.1221, "matched_fragments": 147, "total_fragments": 675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Selenomonas artemidis", "strain": "strain=DSM 19719", "accession": "GCA_000426665.1", "taxid": 671224, 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