SAMEA6148968 ERS3949007 Oscillospiraceae bacterium Cattle rumen microbiome RUG RUG10834 Ruminococcaceae bacterium EBI Generic Generic.1.0 2019-11-13 2019-11-01 ERC000047 SAMEA6148968 THE ROSLIN INSTITUTE THE ROSLIN INSTITUTE 2019-11-13T17:04:45Z 2019-11-01T20:33:52Z public RUG10834 Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs IDBA-UD; v1.1.3; --num_threads 16 --pre_correction --min_contig 300 tetra-nucleotide frequencies and abundance MetaBAT2 not collected 90.67 CheckM 0.45 Bos taurus stomach bodily fluid United Kingdom 55.861398 -3.206493 metagenome cattle rumen bovine gut metagenome Metagenomic sequencing of the rumen of 240 cattle from Scotland Stewart RD, Auffret MD, Warr A, Walker AW, Roehe R, Watson M. Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery. (2019) Nat Biotechnol. 37(8):953-961. doi: 10.1038/s41587-019-0202-3. ERS3610417 RUG10834 Illumina HiSeq 4000 multi-marker approach - MAGpy - Stewart RD, Auffret MD, Snelling TJ, Roehe R, Watson M. (2019) MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs). Bioinformatics. 35(12):2150-2152. doi: 10.1093/bioinformatics/bty905