{
    "type": "genome",
    "identifier": "GCA_902763235.1",
    "organism": "uncultured Ruminococcus sp.",
    "title": "uncultured Ruminococcus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902763235.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6148979",
        "wgs_master": "CACWRH000000000.1",
        "refseq_category": "na",
        "taxid": "165186",
        "species_taxid": "165186",
        "organism_name": "uncultured Ruminococcus sp.",
        "infraspecific_name": "",
        "isolate": "RUG10845",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/17",
        "asm_name": "Rumen uncultured genome RUG10845",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/763/235/GCA_902763235.1_Rumen_uncultured_genome_RUG10845",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-17",
    "dateModified": "2020-02-17",
    "datePublished": "2020-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Ruminococcus sp."
        ],
        "sample_taxid": [
            "165186"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.749 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 94.46,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2627154",
        "Number of Sequences": "119",
        "Longest Sequences (bp)": "125883",
        "N50 (bp)": "32804",
        "Gap Ratio (%)": "0.017509",
        "GCcontent (%)": "50.9",
        "Number of CDSs": "2350",
        "Average Protein Length": "307.9",
        "Coding Ratio (%)": "82.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 94.46,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900314795.1",
                "gtdb_species": "s__Ruminococcus_E sp900314795",
                "ani": 97.5329,
                "matched_fragments": 682,
                "total_fragments": 813,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.68",
                "min_intra_species_ani": "96.71",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003499325.1",
                "gtdb_species": "s__Ruminococcus_E sp003499325",
                "ani": 89.5971,
                "matched_fragments": 373,
                "total_fragments": 813,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002394725.1",
                "gtdb_species": "s__Ruminococcus_E sp002394725",
                "ani": 88.8401,
                "matched_fragments": 460,
                "total_fragments": 813,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.60",
                "min_intra_species_ani": "96.60",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902764715.1",
                "gtdb_species": "s__Ruminococcus_E sp902764715",
                "ani": 88.4224,
                "matched_fragments": 447,
                "total_fragments": 813,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900320995.1",
                "gtdb_species": "s__Ruminococcus_E sp900320995",
                "ani": 87.9875,
                "matched_fragments": 436,
                "total_fragments": 813,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016680995.1",
                "gtdb_species": "s__Ruminococcus_E sp016680995",
                "ani": 87.5169,
                "matched_fragments": 504,
                "total_fragments": 813,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902798755.1",
                "gtdb_species": "s__Ruminococcus_E sp902798755",
                "ani": 83.6744,
                "matched_fragments": 499,
                "total_fragments": 813,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.90",
                "min_intra_species_ani": "96.41",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_902790985.1",
                "gtdb_species": "s__Ruminococcus_E sp902790985",
                "ani": 82.2062,
                "matched_fragments": 385,
                "total_fragments": 813,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.44",
                "min_intra_species_ani": "98.44",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902773635.1",
                "gtdb_species": "s__Ruminococcus_E sp902773635",
                "ani": 81.6117,
                "matched_fragments": 322,
                "total_fragments": 813,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.56",
                "min_intra_species_ani": "96.56",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017457955.1",
                "gtdb_species": "s__Ruminococcus_E sp017457955",
                "ani": 81.5373,
                "matched_fragments": 354,
                "total_fragments": 813,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902797825.1",
                "gtdb_species": "s__Ruminococcus_E sp900313865",
                "ani": 81.266,
                "matched_fragments": 333,
                "total_fragments": 813,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.18,
        "cell_length": -0.18,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.7,
        "optimum_ph": 7.0,
        "genome_size": 3334855.36,
        "gc_content": 43.875,
        "coding_genes": 2772.666,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 64.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__Ruminococcus_E",
        "s__Ruminococcus_E sp900314795"
    ],
    "_genome_taxon": [
        "uncultured",
        "Ruminococcus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__Ruminococcus_E",
        "s__Ruminococcus_E sp900314795",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Acutalibacteraceae",
        "Ruminococcus",
        "E",
        "Ruminococcus",
        "E",
        "sp900314795"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}