{
    "type": "genome",
    "identifier": "GCA_902763255.1",
    "organism": "uncultured Erysipelotrichaceae bacterium",
    "title": "uncultured Erysipelotrichaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902763255.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6148973",
        "wgs_master": "CACWRJ000000000.1",
        "refseq_category": "na",
        "taxid": "331630",
        "species_taxid": "331630",
        "organism_name": "uncultured Erysipelotrichaceae bacterium",
        "infraspecific_name": "",
        "isolate": "RUG10839",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/14",
        "asm_name": "Rumen uncultured genome RUG10839",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/763/255/GCA_902763255.1_Rumen_uncultured_genome_RUG10839",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-14",
    "dateModified": "2020-02-14",
    "datePublished": "2020-02-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Erysipelotrichaceae bacterium"
        ],
        "sample_taxid": [
            "331630"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.442 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 12.5,
        "strain_heterogeneity": 20.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1544054",
        "Number of Sequences": "169",
        "Longest Sequences (bp)": "72001",
        "N50 (bp)": "12964",
        "Gap Ratio (%)": "0.018458",
        "GCcontent (%)": "43.8",
        "Number of CDSs": "1254",
        "Average Protein Length": "319.0",
        "Coding Ratio (%)": "77.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 12.5,
            "strain_heterogeneity": 20.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902794835.1",
                "gtdb_species": "s__UBA4951 sp900320745",
                "ani": 98.2471,
                "matched_fragments": 313,
                "total_fragments": 426,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__UBA4951",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902791935.1",
                "gtdb_species": "s__UBA4951 sp900321485",
                "ani": 86.7016,
                "matched_fragments": 94,
                "total_fragments": 426,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__UBA4951",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "97.71",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_902791085.1",
                "gtdb_species": "s__UBA4951 sp902791085",
                "ani": 80.3271,
                "matched_fragments": 51,
                "total_fragments": 426,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__UBA4951",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900540385.1",
                "gtdb_species": "s__UBA4951 sp900540385",
                "ani": 78.2425,
                "matched_fragments": 66,
                "total_fragments": 426,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__UBA4951",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "97.08",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002297365.1",
                "gtdb_species": "s__UBA4951 sp002297365",
                "ani": 78.0763,
                "matched_fragments": 74,
                "total_fragments": 426,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__UBA4951",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.50",
                "min_intra_species_ani": "99.37",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.333,
        "cell_length": 0.183,
        "doubling_h": null,
        "growth_tmp": 36.057,
        "optimum_tmp": 36.214,
        "optimum_ph": 7.27,
        "genome_size": 2715599.544,
        "gc_content": 38.082,
        "coding_genes": 2417.7,
        "rRNA16S_genes": 7.3,
        "tRNA_genes": 50.0,
        "gram_stain": 1.0,
        "sporulation": 0.235,
        "motility": 0.3,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.869,
        "aerobic_respiration": 0.13,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.933,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.066
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__RFN20",
        "f__CAG-826",
        "g__UBA4951",
        "s__UBA4951 sp900320745"
    ],
    "_genome_taxon": [
        "uncultured",
        "Erysipelotrichaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__RFN20",
        "f__CAG-826",
        "g__UBA4951",
        "s__UBA4951 sp900320745",
        "Bacteria",
        "Bacillota",
        "I",
        "Bacilli",
        "A",
        "RFN20",
        "CAG-826",
        "UBA4951",
        "UBA4951",
        "sp900320745"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}