{
    "type": "genome",
    "identifier": "GCA_902763345.1",
    "organism": "uncultured Erysipelotrichaceae bacterium",
    "title": "uncultured Erysipelotrichaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902763345.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6148991",
        "wgs_master": "CACWRS000000000.1",
        "refseq_category": "na",
        "taxid": "331630",
        "species_taxid": "331630",
        "organism_name": "uncultured Erysipelotrichaceae bacterium",
        "infraspecific_name": "",
        "isolate": "RUG10857",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/14",
        "asm_name": "Rumen uncultured genome RUG10857",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/763/345/GCA_902763345.1_Rumen_uncultured_genome_RUG10857",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-14",
    "dateModified": "2020-02-14",
    "datePublished": "2020-02-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Erysipelotrichaceae bacterium"
        ],
        "sample_taxid": [
            "331630"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.369 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 78.22,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1302424",
        "Number of Sequences": "100",
        "Longest Sequences (bp)": "68284",
        "N50 (bp)": "21587",
        "Gap Ratio (%)": "0.006910",
        "GCcontent (%)": "36.8",
        "Number of CDSs": "1090",
        "Average Protein Length": "336.1",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 78.22,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902798595.1",
                "gtdb_species": "s__RUG14515 sp902798595",
                "ani": 98.8371,
                "matched_fragments": 362,
                "total_fragments": 381,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__RUG14515",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.84",
                "min_intra_species_ani": "98.84",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902801805.1",
                "gtdb_species": "s__RUG14515 sp902801805",
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                "total_fragments": 381,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__RUG14515",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902782395.1",
                "gtdb_species": "s__RUG14515 sp902782395",
                "ani": 87.7893,
                "matched_fragments": 200,
                "total_fragments": 381,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__RUG14515",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017940265.1",
                "gtdb_species": "s__RUG14515 sp017940265",
                "ani": 83.8474,
                "matched_fragments": 234,
                "total_fragments": 381,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__RUG14515",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017551465.1",
                "gtdb_species": "s__RUG14515 sp017551465",
                "ani": 83.6453,
                "matched_fragments": 176,
                "total_fragments": 381,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__RUG14515",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902763555.1",
                "gtdb_species": "s__RUG14515 sp902763555",
                "ani": 83.5838,
                "matched_fragments": 216,
                "total_fragments": 381,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__RUG14515",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.06",
                "min_intra_species_ani": "96.06",
                "mean_intra_species_af": "0.73",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017635465.1",
                "gtdb_species": "s__RUG14515 sp017635465",
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                "matched_fragments": 222,
                "total_fragments": 381,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__RUG14515",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902777015.1",
                "gtdb_species": "s__RUG14515 sp902777015",
                "ani": 82.7394,
                "matched_fragments": 244,
                "total_fragments": 381,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__RUG14515",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017442875.1",
                "gtdb_species": "s__RUG14515 sp017442875",
                "ani": 80.1956,
                "matched_fragments": 170,
                "total_fragments": 381,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__RUG14515",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.333,
        "cell_length": 0.183,
        "doubling_h": null,
        "growth_tmp": 36.057,
        "optimum_tmp": 36.214,
        "optimum_ph": 7.27,
        "genome_size": 2715599.544,
        "gc_content": 38.082,
        "coding_genes": 2417.7,
        "rRNA16S_genes": 7.3,
        "tRNA_genes": 50.0,
        "gram_stain": 1.0,
        "sporulation": 0.235,
        "motility": 0.3,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.869,
        "aerobic_respiration": 0.13,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.933,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.066
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__RFN20",
        "f__CAG-826",
        "g__RUG14515",
        "s__RUG14515 sp902798595"
    ],
    "_genome_taxon": [
        "uncultured",
        "Erysipelotrichaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__RFN20",
        "f__CAG-826",
        "g__RUG14515",
        "s__RUG14515 sp902798595",
        "Bacteria",
        "Bacillota",
        "I",
        "Bacilli",
        "A",
        "RFN20",
        "CAG-826",
        "RUG14515",
        "RUG14515",
        "sp902798595"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}