{
    "type": "genome",
    "identifier": "GCA_902763845.1",
    "organism": "Oscillospiraceae bacterium",
    "title": "Oscillospiraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902763845.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6149034",
        "wgs_master": "CACWTP000000000.1",
        "refseq_category": "na",
        "taxid": "2485925",
        "species_taxid": "2485925",
        "organism_name": "Oscillospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "RUG10900",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG10900",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/763/845/GCA_902763845.1_Rumen_uncultured_genome_RUG10900",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oscillospiraceae bacterium"
        ],
        "sample_taxid": [
            "2485925"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.522 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1879978",
        "Number of Sequences": "231",
        "Longest Sequences (bp)": "34447",
        "N50 (bp)": "10786",
        "Gap Ratio (%)": "0.063777",
        "GCcontent (%)": "63.5",
        "Number of CDSs": "1682",
        "Average Protein Length": "291.8",
        "Coding Ratio (%)": "78.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "23",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Evtepia gabavorous",
                "strain": "strain=KLE1738",
                "accession": "GCA_008121455.1",
                "taxid": 2211183,
                "species_taxid": 2211183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9574,
                "matched_fragments": 252,
                "total_fragments": 514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Evtepia gabavorous",
                "strain": "strain=KLE1738",
                "accession": "GCA_003425665.1",
                "taxid": 2211183,
                "species_taxid": 2211183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9411,
                "matched_fragments": 251,
                "total_fragments": 514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavonifractor plautii",
                "strain": "strain=ATCC 29863",
                "accession": "GCA_000239295.1",
                "taxid": 292800,
                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.0437,
                "matched_fragments": 168,
                "total_fragments": 514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavonifractor plautii",
                "strain": "strain=JCM 32125",
                "accession": "GCA_010508875.1",
                "taxid": 292800,
                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.0287,
                "matched_fragments": 181,
                "total_fragments": 514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoflavonifractor gallinarum",
                "strain": "strain=DSM 107456",
                "accession": "GCA_014982855.1",
                "taxid": 2779352,
                "species_taxid": 2779352,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0191,
                "matched_fragments": 147,
                "total_fragments": 514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium phoceensis",
                "strain": "strain=GD3",
                "accession": "GCA_001244495.1",
                "taxid": 1650661,
                "species_taxid": 1650661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9108,
                "matched_fragments": 148,
                "total_fragments": 514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vescimonas fastidiosa",
                "strain": "strain=MM35",
                "accession": "GCA_018326305.1",
                "taxid": 2714353,
                "species_taxid": 2714353,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4803,
                "matched_fragments": 83,
                "total_fragments": 514,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902781745.1",
                "gtdb_species": "s__Evtepia sp902781745",
                "ani": 98.1865,
                "matched_fragments": 439,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Evtepia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.13",
                "min_intra_species_ani": "97.74",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCA_004551945.1",
                "gtdb_species": "s__Evtepia sp004551945",
                "ani": 82.8753,
                "matched_fragments": 316,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Evtepia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.68",
                "min_intra_species_ani": "98.58",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_019115545.1",
                "gtdb_species": "s__Evtepia faecavium",
                "ani": 82.7466,
                "matched_fragments": 304,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Evtepia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019115225.1",
                "gtdb_species": "s__Evtepia faecigallinarum",
                "ani": 82.4755,
                "matched_fragments": 294,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Evtepia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016296565.1",
                "gtdb_species": "s__Evtepia sp016296565",
                "ani": 82.4315,
                "matched_fragments": 275,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Evtepia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004554585.1",
                "gtdb_species": "s__Evtepia sp004554585",
                "ani": 81.9756,
                "matched_fragments": 302,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Evtepia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.47",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016295225.1",
                "gtdb_species": "s__Evtepia sp016295225",
                "ani": 81.6663,
                "matched_fragments": 250,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Evtepia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017435425.1",
                "gtdb_species": "s__Evtepia sp017435425",
                "ani": 81.1262,
                "matched_fragments": 295,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Evtepia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.49",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017521345.1",
                "gtdb_species": "s__Evtepia sp017521345",
                "ani": 81.014,
                "matched_fragments": 238,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Evtepia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.397,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 6.25,
        "genome_size": 4470621.5,
        "gc_content": 49.895,
        "coding_genes": 4347.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 61.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Oscillospiraceae",
        "g__Evtepia",
        "s__Evtepia sp902781745"
    ],
    "_genome_taxon": [
        "Oscillospiraceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Oscillospiraceae",
        "g__Evtepia",
        "s__Evtepia sp902781745",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Oscillospiraceae",
        "Evtepia",
        "Evtepia",
        "sp902781745"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}