{
    "type": "genome",
    "identifier": "GCA_902765685.1",
    "organism": "uncultured Succinivibrio sp.",
    "title": "uncultured Succinivibrio sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902765685.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6149228",
        "wgs_master": "CACXAS000000000.1",
        "refseq_category": "na",
        "taxid": "540749",
        "species_taxid": "540749",
        "organism_name": "uncultured Succinivibrio sp.",
        "infraspecific_name": "",
        "isolate": "RUG11094",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/17",
        "asm_name": "Rumen uncultured genome RUG11094",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/765/685/GCA_902765685.1_Rumen_uncultured_genome_RUG11094",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-17",
    "dateModified": "2020-02-17",
    "datePublished": "2020-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Succinivibrio sp."
        ],
        "sample_taxid": [
            "540749"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.718 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2546154",
        "Number of Sequences": "81",
        "Longest Sequences (bp)": "327918",
        "N50 (bp)": "75036",
        "Gap Ratio (%)": "0.000314",
        "GCcontent (%)": "36.5",
        "Number of CDSs": "2169",
        "Average Protein Length": "329.6",
        "Coding Ratio (%)": "84.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Succinivibrio dextrinosolvens",
                "strain": "strain=DSM 3072",
                "accession": "GCA_900167015.1",
                "taxid": 83771,
                "species_taxid": 83771,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4557,
                "matched_fragments": 208,
                "total_fragments": 809,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerobiospirillum succiniciproducens",
                "strain": "strain=DSM 6400",
                "accession": "GCA_000482845.1",
                "taxid": 13335,
                "species_taxid": 13335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.827,
                "matched_fragments": 56,
                "total_fragments": 809,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerobiospirillum thomasii",
                "strain": "strain=NCTC12467",
                "accession": "GCA_900445255.1",
                "taxid": 179995,
                "species_taxid": 179995,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5477,
                "matched_fragments": 69,
                "total_fragments": 809,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 2.08,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000431835.1",
                "gtdb_species": "s__Succinivibrio sp000431835",
                "ani": 97.7341,
                "matched_fragments": 633,
                "total_fragments": 809,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.12",
                "min_intra_species_ani": "95.78",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900315395.1",
                "gtdb_species": "s__Succinivibrio sp900315395",
                "ani": 90.0892,
                "matched_fragments": 580,
                "total_fragments": 809,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.82",
                "min_intra_species_ani": "99.64",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002449335.1",
                "gtdb_species": "s__Succinivibrio sp002449335",
                "ani": 90.0737,
                "matched_fragments": 619,
                "total_fragments": 809,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.89",
                "min_intra_species_ani": "95.86",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900316375.1",
                "gtdb_species": "s__Succinivibrio sp900316375",
                "ani": 79.5005,
                "matched_fragments": 285,
                "total_fragments": 809,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012519775.1",
                "gtdb_species": "s__Succinivibrio sp012519775",
                "ani": 79.4557,
                "matched_fragments": 245,
                "total_fragments": 809,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902785325.1",
                "gtdb_species": "s__Succinivibrio sp003456415",
                "ani": 79.3989,
                "matched_fragments": 264,
                "total_fragments": 809,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.60",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_004556245.1",
                "gtdb_species": "s__Succinivibrio hippei_B",
                "ani": 78.9251,
                "matched_fragments": 177,
                "total_fragments": 809,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011065405.1",
                "gtdb_species": "s__Succinivibrio dextrinosolvens_A",
                "ani": 78.8041,
                "matched_fragments": 189,
                "total_fragments": 809,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "97.32",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900317105.1",
                "gtdb_species": "s__Succinivibrio sp900317105",
                "ani": 78.5125,
                "matched_fragments": 177,
                "total_fragments": 809,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "96.63",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900167015.1",
                "gtdb_species": "s__Succinivibrio dextrinosolvens",
                "ani": 78.4633,
                "matched_fragments": 207,
                "total_fragments": 809,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.59",
                "min_intra_species_ani": "96.11",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 38.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2857734.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Succinivibrionaceae",
        "g__Succinivibrio",
        "s__Succinivibrio sp000431835"
    ],
    "_genome_taxon": [
        "uncultured",
        "Succinivibrio",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Succinivibrionaceae",
        "g__Succinivibrio",
        "s__Succinivibrio sp000431835",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Succinivibrionaceae",
        "Succinivibrio",
        "Succinivibrio",
        "sp000431835"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}