{
    "type": "genome",
    "identifier": "GCA_902766495.1",
    "organism": "Fibrobacter succinogenes",
    "title": "Fibrobacter succinogenes",
    "description": "derived from metagenome; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902766495.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6149307",
        "wgs_master": "CACXDW000000000.1",
        "refseq_category": "na",
        "taxid": "833",
        "species_taxid": "833",
        "organism_name": "Fibrobacter succinogenes",
        "infraspecific_name": "",
        "isolate": "RUG11173",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG11173",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "GCF_902766495.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/766/495/GCA_902766495.1_Rumen_uncultured_genome_RUG11173",
        "excluded_from_refseq": "derived from metagenome; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fibrobacter succinogenes"
        ],
        "sample_taxid": [
            "833"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.691 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 74.31,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2467306",
        "Number of Sequences": "78",
        "Longest Sequences (bp)": "134560",
        "N50 (bp)": "45507",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.2",
        "Number of CDSs": "2086",
        "Average Protein Length": "359.0",
        "Coding Ratio (%)": "91.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Hallerella porci",
                "strain": "strain=UWS4",
                "accession": "GCA_003148885.1",
                "taxid": 1945871,
                "species_taxid": 1945871,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.774,
                "matched_fragments": 764,
                "total_fragments": 786,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Hallerella succinigenes",
                "strain": "strain=UWS3",
                "accession": "GCA_002797675.1",
                "taxid": 1896222,
                "species_taxid": 1896222,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3362,
                "matched_fragments": 260,
                "total_fragments": 786,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fibrobacter succinogenes subsp. succinogenes",
                "strain": "strain=S85",
                "accession": "GCA_000146505.1",
                "taxid": 834,
                "species_taxid": 833,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9011,
                "matched_fragments": 78,
                "total_fragments": 786,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fibrobacter succinogenes subsp. succinogenes",
                "strain": "strain=S85",
                "accession": "GCA_000024665.1",
                "taxid": 834,
                "species_taxid": 833,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8644,
                "matched_fragments": 79,
                "total_fragments": 786,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 74.31,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003148885.1",
                "gtdb_species": "s__Hallerella porci",
                "ani": 99.774,
                "matched_fragments": 764,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Hallerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.70",
                "min_intra_species_ani": "99.62",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900167415.1",
                "gtdb_species": "s__Hallerella intestinalis",
                "ani": 78.6829,
                "matched_fragments": 322,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Hallerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "97.77",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002797675.1",
                "gtdb_species": "s__Hallerella succinigenes",
                "ani": 78.3208,
                "matched_fragments": 259,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Hallerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.45",
                "min_intra_species_ani": "98.31",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002390045.1",
                "gtdb_species": "s__Hallerella sp002390045",
                "ani": 78.1787,
                "matched_fragments": 233,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Hallerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.06",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_017959225.1",
                "gtdb_species": "s__Hallerella sp017959225",
                "ani": 77.9539,
                "matched_fragments": 253,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Hallerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900177705.1",
                "gtdb_species": "s__Fibrobacter sp900177705",
                "ani": 77.113,
                "matched_fragments": 78,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.82",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900142545.1",
                "gtdb_species": "s__Fibrobacter sp900142545",
                "ani": 77.0581,
                "matched_fragments": 77,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000146505.1",
                "gtdb_species": "s__Fibrobacter succinogenes",
                "ani": 76.8689,
                "matched_fragments": 79,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017520105.1",
                "gtdb_species": "s__Fibrobacter sp017520105",
                "ani": 76.7315,
                "matched_fragments": 59,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.61",
                "min_intra_species_ani": "96.61",
                "mean_intra_species_af": "0.72",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": -0.046,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 3806078.222,
        "gc_content": 48.062,
        "coding_genes": 3037.6,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 58.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Fibrobacterota",
        "c__Fibrobacteria",
        "o__Fibrobacterales",
        "f__Fibrobacteraceae",
        "g__Hallerella",
        "s__Hallerella porci"
    ],
    "_genome_taxon": [
        "Fibrobacter",
        "succinogenes",
        "d__Bacteria",
        "p__Fibrobacterota",
        "c__Fibrobacteria",
        "o__Fibrobacterales",
        "f__Fibrobacteraceae",
        "g__Hallerella",
        "s__Hallerella porci",
        "Bacteria",
        "Fibrobacterota",
        "Fibrobacteria",
        "Fibrobacterales",
        "Fibrobacteraceae",
        "Hallerella",
        "Hallerella",
        "porci"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}