{
    "type": "genome",
    "identifier": "GCA_902766645.1",
    "organism": "Lachnobacterium bovis",
    "title": "Lachnobacterium bovis",
    "description": "derived from metagenome; incomplete metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902766645.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6149318",
        "wgs_master": "CACXEI000000000.1",
        "refseq_category": "na",
        "taxid": "140626",
        "species_taxid": "140626",
        "organism_name": "Lachnobacterium bovis",
        "infraspecific_name": "",
        "isolate": "RUG11184",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG11184",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "GCF_902766645.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/766/645/GCA_902766645.1_Rumen_uncultured_genome_RUG11184",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lachnobacterium bovis"
        ],
        "sample_taxid": [
            "140626"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.677 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2429297",
        "Number of Sequences": "204",
        "Longest Sequences (bp)": "151472",
        "N50 (bp)": "24589",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "31.0",
        "Number of CDSs": "2024",
        "Average Protein Length": "321.8",
        "Coding Ratio (%)": "80.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lachnobacterium bovis",
                "strain": "strain=DSM 14045",
                "accession": "GCA_900107245.1",
                "taxid": 140626,
                "species_taxid": 140626,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.1644,
                "matched_fragments": 657,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lachnospira multipara",
                "strain": "strain=ATCC 19207",
                "accession": "GCA_000424105.1",
                "taxid": 28051,
                "species_taxid": 28051,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4485,
                "matched_fragments": 53,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium uniforme",
                "strain": "strain=ATCC 35992",
                "accession": "GCA_900167115.1",
                "taxid": 39495,
                "species_taxid": 39495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3624,
                "matched_fragments": 61,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerosporobacter mobilis",
                "strain": "strain=DSM 15930",
                "accession": "GCA_900142955.1",
                "taxid": 264463,
                "species_taxid": 264463,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.356,
                "matched_fragments": 51,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 2.08,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900107245.1",
                "gtdb_species": "s__Lachnobacterium bovis",
                "ani": 99.1432,
                "matched_fragments": 658,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "99.14",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900111325.1",
                "gtdb_species": "s__Lachnobacterium bovis_A",
                "ani": 84.3854,
                "matched_fragments": 543,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "99.17",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900113385.1",
                "gtdb_species": "s__Lachnobacterium sp900113385",
                "ani": 79.7082,
                "matched_fragments": 313,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015057035.1",
                "gtdb_species": "s__Agathobacter sp015057035",
                "ani": 77.7341,
                "matched_fragments": 52,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001940165.1",
                "gtdb_species": "s__Roseburia sp001940165",
                "ani": 77.5054,
                "matched_fragments": 67,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001940225.1",
                "gtdb_species": "s__14-2 sp001940225",
                "ani": 77.0495,
                "matched_fragments": 62,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017623935.1",
                "gtdb_species": "s__Agathobacter sp017623935",
                "ani": 76.843,
                "matched_fragments": 59,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "99.03",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017625255.1",
                "gtdb_species": "s__1XD42-69 sp017625255",
                "ani": 76.0429,
                "matched_fragments": 51,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__1XD42-69",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.301,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2643933.6,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Lachnobacterium",
        "s__Lachnobacterium bovis"
    ],
    "_genome_taxon": [
        "Lachnobacterium",
        "bovis",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Lachnobacterium",
        "s__Lachnobacterium bovis",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Lachnobacterium",
        "Lachnobacterium",
        "bovis"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}