{
    "type": "genome",
    "identifier": "GCA_902766765.1",
    "organism": "uncultured Elusimicrobium sp.",
    "title": "uncultured Elusimicrobium sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902766765.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6149321",
        "wgs_master": "CACXER000000000.1",
        "refseq_category": "na",
        "taxid": "575659",
        "species_taxid": "575659",
        "organism_name": "uncultured Elusimicrobium sp.",
        "infraspecific_name": "",
        "isolate": "RUG11187",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/14",
        "asm_name": "Rumen uncultured genome RUG11187",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/766/765/GCA_902766765.1_Rumen_uncultured_genome_RUG11187",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-14",
    "dateModified": "2020-02-14",
    "datePublished": "2020-02-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Elusimicrobium sp."
        ],
        "sample_taxid": [
            "575659"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.388 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 76.56,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1357042",
        "Number of Sequences": "102",
        "Longest Sequences (bp)": "64035",
        "N50 (bp)": "20582",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.9",
        "Number of CDSs": "1208",
        "Average Protein Length": "317.5",
        "Coding Ratio (%)": "84.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 76.56,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_902766765.1",
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                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__Elusimicrobiaceae;g__UBA1436",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900315795.1",
                "gtdb_species": "s__UBA1436 sp900315795",
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                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__Elusimicrobiaceae;g__UBA1436",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.45",
                "min_intra_species_ani": "96.90",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900315845.1",
                "gtdb_species": "s__UBA1436 sp900315845",
                "ani": 80.0719,
                "matched_fragments": 242,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__Elusimicrobiaceae;g__UBA1436",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017646765.1",
                "gtdb_species": "s__UBA1436 sp017646765",
                "ani": 79.3313,
                "matched_fragments": 199,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__Elusimicrobiaceae;g__UBA1436",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002309715.1",
                "gtdb_species": "s__UBA1436 sp002309715",
                "ani": 79.2558,
                "matched_fragments": 191,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__Elusimicrobiaceae;g__UBA1436",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902765225.1",
                "gtdb_species": "s__UBA1436 sp902765225",
                "ani": 78.6226,
                "matched_fragments": 153,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__Elusimicrobiaceae;g__UBA1436",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.70",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017525025.1",
                "gtdb_species": "s__UBA1436 sp017525025",
                "ani": 78.6034,
                "matched_fragments": 158,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__Elusimicrobiaceae;g__UBA1436",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902781765.1",
                "gtdb_species": "s__UBA1436 sp902781765",
                "ani": 78.5907,
                "matched_fragments": 118,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__Elusimicrobiaceae;g__UBA1436",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902794125.1",
                "gtdb_species": "s__UBA1436 sp902794125",
                "ani": 78.4775,
                "matched_fragments": 150,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__Elusimicrobiaceae;g__UBA1436",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002432025.1",
                "gtdb_species": "s__UBA1436 sp002432025",
                "ani": 77.9435,
                "matched_fragments": 121,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__Elusimicrobiaceae;g__UBA1436",
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                "mean_intra_species_ani": "98.20",
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                "mean_intra_species_af": "0.93",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002159705.1",
                "gtdb_species": "s__UBA1436 sp002159705",
                "ani": 77.5367,
                "matched_fragments": 130,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__Elusimicrobiaceae;g__UBA1436",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002329395.1",
                "gtdb_species": "s__UBA1436 sp002329395",
                "ani": 77.231,
                "matched_fragments": 117,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__Elusimicrobiaceae;g__UBA1436",
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                "mean_intra_species_ani": "98.64",
                "min_intra_species_ani": "98.61",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 26.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.5,
        "genome_size": 1643561.6,
        "gc_content": 40.0,
        "coding_genes": 1525.333,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 45.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Elusimicrobiota",
        "c__Elusimicrobia",
        "o__Elusimicrobiales",
        "f__Elusimicrobiaceae",
        "g__Avelusimicrobium",
        "s__Avelusimicrobium sp902766765"
    ],
    "_genome_taxon": [
        "uncultured",
        "Elusimicrobium",
        "sp.",
        "d__Bacteria",
        "p__Elusimicrobiota",
        "c__Elusimicrobia",
        "o__Elusimicrobiales",
        "f__Elusimicrobiaceae",
        "g__Avelusimicrobium",
        "s__Avelusimicrobium sp902766765",
        "Bacteria",
        "Elusimicrobiota",
        "Elusimicrobia",
        "Elusimicrobiales",
        "Elusimicrobiaceae",
        "Avelusimicrobium",
        "Avelusimicrobium",
        "sp902766765"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}