{ "type": "genome", "identifier": "GCA_902767145.1", "organism": "Oscillospiraceae bacterium", "title": "Oscillospiraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902767145.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6149368", "wgs_master": "CACXGG000000000.1", "refseq_category": "na", "taxid": "2485925", "species_taxid": "2485925", "organism_name": "Oscillospiraceae bacterium", "infraspecific_name": "", "isolate": "RUG11234", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/15", "asm_name": "Rumen uncultured genome RUG11234", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/767/145/GCA_902767145.1_Rumen_uncultured_genome_RUG11234", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-15", "dateModified": "2020-02-15", "datePublished": "2020-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Oscillospiraceae bacterium" ], "sample_taxid": [ "2485925" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.539 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 65.66, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1891814", "Number of Sequences": "291", "Longest Sequences (bp)": "24918", "N50 (bp)": "7970", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.6", "Number of CDSs": "1464", "Average Protein Length": "326.6", "Coding Ratio (%)": "75.8", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 65.66, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_902767145.1", "gtdb_species": "s__Saccharofermentans sp902767145", "ani": 100.0, "matched_fragments": 470, "total_fragments": 479, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_017612755.1", "gtdb_species": "s__Saccharofermentans sp017612755", "ani": 84.6475, "matched_fragments": 312, "total_fragments": 479, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "98.14", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003543635.1", "gtdb_species": "s__Saccharofermentans sp003543635", "ani": 79.9615, "matched_fragments": 181, "total_fragments": 479, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.66", "min_intra_species_ani": "98.66", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.74", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900176545.1", "gtdb_species": "s__Saccharofermentans sp900176545", "ani": 78.4784, "matched_fragments": 169, "total_fragments": 479, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.66", "min_intra_species_ani": "98.66", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900111435.1", "gtdb_species": "s__Saccharofermentans sp900111435", "ani": 78.4553, "matched_fragments": 153, "total_fragments": 479, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.11", "min_intra_species_ani": "97.94", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_017529925.1", "gtdb_species": "s__Saccharofermentans sp017529925", "ani": 77.9933, "matched_fragments": 129, "total_fragments": 479, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "97.80", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_017958365.1", "gtdb_species": "s__Saccharofermentans sp017958365", "ani": 77.4582, "matched_fragments": 70, "total_fragments": 479, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900313405.1", "gtdb_species": "s__Saccharofermentans sp900313405", "ani": 77.2886, "matched_fragments": 56, "total_fragments": 479, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "97.71", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.75", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_902782985.1", "gtdb_species": "s__Saccharofermentans sp902782985", "ani": 77.087, "matched_fragments": 77, "total_fragments": 479, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002394605.1", "gtdb_species": "s__Saccharofermentans sp002394605", "ani": 76.8013, "matched_fragments": 65, "total_fragments": 479, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902782125.1", "gtdb_species": "s__Saccharofermentans sp902782125", "ani": 76.6233, "matched_fragments": 56, "total_fragments": 479, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.57", "min_intra_species_ani": "95.78", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_016292135.1", "gtdb_species": "s__Saccharofermentans sp016292135", "ani": 76.5443, "matched_fragments": 53, "total_fragments": 479, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902780785.1", "gtdb_species": "s__Saccharofermentans sp902780785", "ani": 76.4176, "matched_fragments": 56, "total_fragments": 479, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.16", "min_intra_species_ani": "98.16", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.397, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 30.0, "optimum_ph": 6.25, "genome_size": 4470621.5, "gc_content": 49.895, "coding_genes": 4347.333, "rRNA16S_genes": 3.0, "tRNA_genes": 61.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Saccharofermentanales", "f__Saccharofermentanaceae", "g__Saccharofermentans", "s__Saccharofermentans sp902767145" ], "_genome_taxon": [ "Oscillospiraceae", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Saccharofermentanales", "f__Saccharofermentanaceae", "g__Saccharofermentans", "s__Saccharofermentans sp902767145", "Bacteria", "Bacillota", "A", "Clostridia", "Saccharofermentanales", "Saccharofermentanaceae", "Saccharofermentans", "Saccharofermentans", "sp902767145" ], "_meo": [ { "id": "MEO_0000046", "label": "rumen" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }