{
    "type": "genome",
    "identifier": "GCA_902770045.1",
    "organism": "uncultured bacterium",
    "title": "uncultured bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902770045.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6149669",
        "wgs_master": "CACXRO000000000.1",
        "refseq_category": "na",
        "taxid": "77133",
        "species_taxid": "77133",
        "organism_name": "uncultured bacterium",
        "infraspecific_name": "",
        "isolate": "RUG11534",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG11534",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/770/045/GCA_902770045.1_Rumen_uncultured_genome_RUG11534",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured bacterium"
        ],
        "sample_taxid": [
            "77133"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.628 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.29,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2270887",
        "Number of Sequences": "87",
        "Longest Sequences (bp)": "112055",
        "N50 (bp)": "36993",
        "Gap Ratio (%)": "0.001013",
        "GCcontent (%)": "64.7",
        "Number of CDSs": "1778",
        "Average Protein Length": "376.1",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Agrococcus carbonis",
                "strain": "strain=DSM 22965",
                "accession": "GCA_900104705.1",
                "taxid": 684552,
                "species_taxid": 684552,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4426,
                "matched_fragments": 63,
                "total_fragments": 715,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermomonospora umbrina",
                "strain": "strain=DSM 43927",
                "accession": "GCA_003386555.1",
                "taxid": 111806,
                "species_taxid": 111806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2215,
                "matched_fragments": 56,
                "total_fragments": 715,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Plasticicumulans lactativorans",
                "strain": "strain=DSM 25287",
                "accession": "GCA_004341245.1",
                "taxid": 1133106,
                "species_taxid": 1133106,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0875,
                "matched_fragments": 70,
                "total_fragments": 715,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Motilibacter deserti",
                "strain": "strain=E257",
                "accession": "GCA_011250635.1",
                "taxid": 2714956,
                "species_taxid": 2714956,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0076,
                "matched_fragments": 56,
                "total_fragments": 715,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tahibacter caeni",
                "strain": "strain=BUT-6",
                "accession": "GCA_024609805.1",
                "taxid": 1453545,
                "species_taxid": 1453545,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0016,
                "matched_fragments": 68,
                "total_fragments": 715,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea cavernae",
                "strain": "strain=CGMCC 4.7368",
                "accession": "GCA_014646355.1",
                "taxid": 2045107,
                "species_taxid": 2045107,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.887,
                "matched_fragments": 55,
                "total_fragments": 715,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea cavernae",
                "strain": "strain=SYSU K10005",
                "accession": "GCA_020215905.1",
                "taxid": 2045107,
                "species_taxid": 2045107,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.887,
                "matched_fragments": 55,
                "total_fragments": 715,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea indica",
                "strain": "strain=DRQ-2",
                "accession": "GCA_002850745.1",
                "taxid": 1581193,
                "species_taxid": 1581193,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8321,
                "matched_fragments": 79,
                "total_fragments": 715,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planotetraspora mira",
                "strain": "strain=NBRC 15435",
                "accession": "GCA_016863275.1",
                "taxid": 58121,
                "species_taxid": 58121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7413,
                "matched_fragments": 56,
                "total_fragments": 715,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea basaltis",
                "strain": "strain=160415",
                "accession": "GCA_005893125.1",
                "taxid": 2495887,
                "species_taxid": 2495887,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6422,
                "matched_fragments": 79,
                "total_fragments": 715,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.29,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902770045.1",
                "gtdb_species": "s__UBA1067 sp902770045",
                "ani": 100.0,
                "matched_fragments": 712,
                "total_fragments": 715,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__UBA1067",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.51",
                "min_intra_species_ani": "95.51",
                "mean_intra_species_af": "0.70",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902764415.1",
                "gtdb_species": "s__UBA1067 sp002351765",
                "ani": 94.8636,
                "matched_fragments": 533,
                "total_fragments": 715,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__UBA1067",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.23",
                "min_intra_species_ani": "96.23",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_004551905.1",
                "gtdb_species": "s__UBA1067 sp004551905",
                "ani": 94.1529,
                "matched_fragments": 424,
                "total_fragments": 715,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__UBA1067",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902800055.1",
                "gtdb_species": "s__UBA1067 sp902800055",
                "ani": 92.3217,
                "matched_fragments": 489,
                "total_fragments": 715,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__UBA1067",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.21",
                "min_intra_species_ani": "96.21",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017432385.1",
                "gtdb_species": "s__UBA1067 sp017432385",
                "ani": 80.9521,
                "matched_fragments": 231,
                "total_fragments": 715,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__UBA1067",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900321255.1",
                "gtdb_species": "s__UBA1067 sp900321255",
                "ani": 80.9493,
                "matched_fragments": 276,
                "total_fragments": 715,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__UBA1067",
                "ani_circumscription_radius": 95.6109,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900320855.1",
                "gtdb_species": "s__UBA1067 sp900320855",
                "ani": 80.5241,
                "matched_fragments": 253,
                "total_fragments": 715,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__UBA1067",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002321305.1",
                "gtdb_species": "s__UBA1067 sp002321305",
                "ani": 80.4989,
                "matched_fragments": 272,
                "total_fragments": 715,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__UBA1067",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902799955.1",
                "gtdb_species": "s__UBA1067 sp902799955",
                "ani": 80.2044,
                "matched_fragments": 255,
                "total_fragments": 715,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__UBA1067",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.66",
                "min_intra_species_ani": "95.66",
                "mean_intra_species_af": "0.72",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017405115.1",
                "gtdb_species": "s__UBA1067 sp017405115",
                "ani": 79.8679,
                "matched_fragments": 316,
                "total_fragments": 715,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__UBA1067",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902773015.1",
                "gtdb_species": "s__UBA1067 sp902773015",
                "ani": 79.426,
                "matched_fragments": 219,
                "total_fragments": 715,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__UBA1067",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017514235.1",
                "gtdb_species": "s__UBA1067 sp017514235",
                "ani": 79.2606,
                "matched_fragments": 250,
                "total_fragments": 715,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__UBA1067",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Kiritimatiellia",
        "o__RFP12",
        "f__UBA1067",
        "g__UBA1067",
        "s__UBA1067 sp902770045"
    ],
    "_genome_taxon": [
        "uncultured",
        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Kiritimatiellia",
        "o__RFP12",
        "f__UBA1067",
        "g__UBA1067",
        "s__UBA1067 sp902770045",
        "Bacteria",
        "Verrucomicrobiota",
        "Kiritimatiellia",
        "RFP12",
        "UBA1067",
        "UBA1067",
        "UBA1067",
        "sp902770045"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}