{
    "type": "genome",
    "identifier": "GCA_902771825.1",
    "organism": "uncultured Ruminococcus sp.",
    "title": "uncultured Ruminococcus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902771825.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6149851",
        "wgs_master": "CACXYS000000000.1",
        "refseq_category": "na",
        "taxid": "165186",
        "species_taxid": "165186",
        "organism_name": "uncultured Ruminococcus sp.",
        "infraspecific_name": "",
        "isolate": "RUG11716",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG11716",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/771/825/GCA_902771825.1_Rumen_uncultured_genome_RUG11716",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Ruminococcus sp."
        ],
        "sample_taxid": [
            "165186"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.585 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 79.17,
        "contamination": 0.46,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2060399",
        "Number of Sequences": "263",
        "Longest Sequences (bp)": "42886",
        "N50 (bp)": "10618",
        "Gap Ratio (%)": "0.015143",
        "GCcontent (%)": "53.3",
        "Number of CDSs": "1617",
        "Average Protein Length": "309.5",
        "Coding Ratio (%)": "72.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 79.17,
            "contamination": 0.46,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
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                "accession": "GCA_900319615.1",
                "gtdb_species": "s__Ruminococcus_E sp900319615",
                "ani": 97.798,
                "matched_fragments": 400,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.69",
                "min_intra_species_ani": "97.08",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 10,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900320995.1",
                "gtdb_species": "s__Ruminococcus_E sp900320995",
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                "matched_fragments": 269,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902785355.1",
                "gtdb_species": "s__Ruminococcus_E sp902785355",
                "ani": 80.9036,
                "matched_fragments": 312,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017403985.1",
                "gtdb_species": "s__Ruminococcus_E sp017403985",
                "ani": 80.7049,
                "matched_fragments": 331,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902773635.1",
                "gtdb_species": "s__Ruminococcus_E sp902773635",
                "ani": 80.6954,
                "matched_fragments": 252,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.56",
                "min_intra_species_ani": "96.56",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900314795.1",
                "gtdb_species": "s__Ruminococcus_E sp900314795",
                "ani": 80.6182,
                "matched_fragments": 300,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.68",
                "min_intra_species_ani": "96.71",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_017457955.1",
                "gtdb_species": "s__Ruminococcus_E sp017457955",
                "ani": 80.5327,
                "matched_fragments": 230,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902798755.1",
                "gtdb_species": "s__Ruminococcus_E sp902798755",
                "ani": 80.5227,
                "matched_fragments": 317,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.90",
                "min_intra_species_ani": "96.41",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_902776975.1",
                "gtdb_species": "s__Ruminococcus_E sp902776975",
                "ani": 80.415,
                "matched_fragments": 286,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.50",
                "min_intra_species_ani": "96.42",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_003499325.1",
                "gtdb_species": "s__Ruminococcus_E sp003499325",
                "ani": 80.3654,
                "matched_fragments": 223,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017405065.1",
                "gtdb_species": "s__Ruminococcus_E sp017405065",
                "ani": 80.2523,
                "matched_fragments": 292,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902790985.1",
                "gtdb_species": "s__Ruminococcus_E sp902790985",
                "ani": 80.2373,
                "matched_fragments": 261,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.44",
                "min_intra_species_ani": "98.44",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017404665.1",
                "gtdb_species": "s__Ruminococcus_E sp017404665",
                "ani": 80.2216,
                "matched_fragments": 295,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002394725.1",
                "gtdb_species": "s__Ruminococcus_E sp002394725",
                "ani": 80.0091,
                "matched_fragments": 268,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
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                "mean_intra_species_ani": "96.60",
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                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902797825.1",
                "gtdb_species": "s__Ruminococcus_E sp900313865",
                "ani": 79.5748,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
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                "mean_intra_species_ani": "99.68",
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            },
            {
                "accession": "GCA_900315815.1",
                "gtdb_species": "s__Ruminococcus_E sp900315815",
                "ani": 79.2605,
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                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
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                "mean_intra_species_ani": "99.80",
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                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902799325.1",
                "gtdb_species": "s__Ruminococcus_E sp902799325",
                "ani": 77.2367,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.18,
        "cell_length": -0.18,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.7,
        "optimum_ph": 7.0,
        "genome_size": 3334855.36,
        "gc_content": 43.875,
        "coding_genes": 2772.666,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 64.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
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        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__Ruminococcus_E",
        "s__Ruminococcus_E sp900319615"
    ],
    "_genome_taxon": [
        "uncultured",
        "Ruminococcus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__Ruminococcus_E",
        "s__Ruminococcus_E sp900319615",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Acutalibacteraceae",
        "Ruminococcus",
        "E",
        "Ruminococcus",
        "E",
        "sp900319615"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}