{
    "type": "genome",
    "identifier": "GCA_902774005.1",
    "organism": "uncultured Bacteroidales bacterium",
    "title": "uncultured Bacteroidales bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902774005.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6150059",
        "wgs_master": "CACYGK000000000.1",
        "refseq_category": "na",
        "taxid": "194843",
        "species_taxid": "194843",
        "organism_name": "uncultured Bacteroidales bacterium",
        "infraspecific_name": "",
        "isolate": "RUG11924",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG11924",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/774/005/GCA_902774005.1_Rumen_uncultured_genome_RUG11924",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Bacteroidales bacterium"
        ],
        "sample_taxid": [
            "194843"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.608 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2119434",
        "Number of Sequences": "80",
        "Longest Sequences (bp)": "109641",
        "N50 (bp)": "34340",
        "Gap Ratio (%)": "0.008351",
        "GCcontent (%)": "47.6",
        "Number of CDSs": "1668",
        "Average Protein Length": "371.4",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Prevotella ruminicola",
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                "accession": "GCA_000025925.1",
                "taxid": 839,
                "species_taxid": 839,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8968,
                "matched_fragments": 58,
                "total_fragments": 664,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella ruminicola",
                "strain": "strain=ATCC 19189",
                "accession": "GCA_900108375.1",
                "taxid": 839,
                "species_taxid": 839,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6394,
                "matched_fragments": 56,
                "total_fragments": 664,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_902774005.1",
                "gtdb_species": "s__UBA4334 sp902774005",
                "ani": 100.0,
                "matched_fragments": 656,
                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA4334",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.45",
                "min_intra_species_ani": "96.72",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_905233285.1",
                "gtdb_species": "s__UBA4334 sp905233285",
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                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA4334",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002342585.1",
                "gtdb_species": "s__UBA4334 sp002342585",
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                "matched_fragments": 301,
                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA4334",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.26",
                "min_intra_species_ani": "96.88",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_002353215.1",
                "gtdb_species": "s__UBA4334 sp002353215",
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                "matched_fragments": 203,
                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA4334",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002353575.1",
                "gtdb_species": "s__UBA4334 sp002353575",
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                "matched_fragments": 300,
                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA4334",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_017540585.1",
                "gtdb_species": "s__UBA4334 sp017540585",
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                "matched_fragments": 92,
                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA4334",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.33",
                "min_intra_species_ani": "96.33",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017617575.1",
                "gtdb_species": "s__UBA4334 sp017617575",
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                "matched_fragments": 100,
                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA4334",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017453465.1",
                "gtdb_species": "s__UBA4334 sp017453465",
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                "matched_fragments": 150,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA4334",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905236065.1",
                "gtdb_species": "s__UBA4334 sp905236065",
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                "matched_fragments": 124,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA4334",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902802265.1",
                "gtdb_species": "s__UBA4334 sp902802265",
                "ani": 77.2347,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA4334",
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                "mean_intra_species_ani": "97.98",
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                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905234125.1",
                "gtdb_species": "s__UBA4334 sp905234125",
                "ani": 77.2312,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA4334",
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                "mean_intra_species_ani": "98.16",
                "min_intra_species_ani": "98.16",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.217,
        "cell_length": 0.157,
        "doubling_h": 0.206,
        "growth_tmp": 36.585,
        "optimum_tmp": 36.041,
        "optimum_ph": 7.086,
        "genome_size": 3658719.825,
        "gc_content": 44.947,
        "coding_genes": 3043.648,
        "rRNA16S_genes": 4.032,
        "tRNA_genes": 57.661,
        "gram_stain": 0.014,
        "sporulation": 0.0,
        "motility": 0.04,
        "range_salinity": 0.0,
        "facultative_respiration": 0.006,
        "anaerobic_respiration": 0.958,
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        "mesophilic_range_tmp": 0.985,
        "thermophilic_range_tmp": 0.014,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.95,
        "coccus_cell_shape": 0.024,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.024,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__UBA4334",
        "s__UBA4334 sp902774005"
    ],
    "_genome_taxon": [
        "uncultured",
        "Bacteroidales",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__UBA4334",
        "s__UBA4334 sp902774005",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "UBA4334",
        "UBA4334",
        "sp902774005"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}