{ "type": "genome", "identifier": "GCA_902774705.1", "organism": "uncultured Methanobrevibacter sp.", "title": "uncultured Methanobrevibacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902774705.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6150131", "wgs_master": "CACYJR000000000.1", "refseq_category": "na", "taxid": "253161", "species_taxid": "253161", "organism_name": "uncultured Methanobrevibacter sp.", "infraspecific_name": "", "isolate": "RUG11996", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/17", "asm_name": "Rumen uncultured genome RUG11996", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/774/705/GCA_902774705.1_Rumen_uncultured_genome_RUG11996", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-17", "dateModified": "2020-02-17", "datePublished": "2020-02-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Methanobrevibacter sp." ], "sample_taxid": [ "253161" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.884 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 63.23, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3173759", "Number of Sequences": "215", "Longest Sequences (bp)": "360654", "N50 (bp)": "26537", "Gap Ratio (%)": "0.003781", "GCcontent (%)": "32.5", "Number of CDSs": "3019", "Average Protein Length": "284.6", "Coding Ratio (%)": "81.2", "Number of rRNAs": "0", "Number of tRNAs": "82", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanobrevibacter gottschalkii", "strain": "strain=DSM 11977", "accession": "GCA_003814835.1", "taxid": 190974, "species_taxid": 190974, "relation_to_type": "type", "validated": true, "ani": 80.3468, "matched_fragments": 304, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter woesei", "strain": "strain=DSM 11979", "accession": "GCA_003111605.1", "taxid": 190976, "species_taxid": 190976, "relation_to_type": "type", "validated": true, "ani": 78.2683, "matched_fragments": 166, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter cuticularis", "strain": "strain=DSM 11139", "accession": "GCA_001639285.1", "taxid": 47311, "species_taxid": 47311, "relation_to_type": "type", "validated": true, "ani": 75.6569, "matched_fragments": 72, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 63.23, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900314695.1", "gtdb_species": "s__Methanobrevibacter_A sp900314695", "ani": 97.1478, "matched_fragments": 580, "total_fragments": 945, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.43", "min_intra_species_ani": "97.20", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.69", "num_clustered_genomes": 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"rumen" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }