{
    "type": "genome",
    "identifier": "GCA_902778065.1",
    "organism": "uncultured Erysipelotrichaceae bacterium",
    "title": "uncultured Erysipelotrichaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902778065.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6150470",
        "wgs_master": "CACYWJ000000000.1",
        "refseq_category": "na",
        "taxid": "331630",
        "species_taxid": "331630",
        "organism_name": "uncultured Erysipelotrichaceae bacterium",
        "infraspecific_name": "",
        "isolate": "RUG12334",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG12334",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/778/065/GCA_902778065.1_Rumen_uncultured_genome_RUG12334",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Erysipelotrichaceae bacterium"
        ],
        "sample_taxid": [
            "331630"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.568 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 93.29,
        "contamination": 0.52,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1994626",
        "Number of Sequences": "269",
        "Longest Sequences (bp)": "36085",
        "N50 (bp)": "9377",
        "Gap Ratio (%)": "0.012133",
        "GCcontent (%)": "46.5",
        "Number of CDSs": "1825",
        "Average Protein Length": "286.2",
        "Coding Ratio (%)": "78.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 93.29,
            "contamination": 0.52,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900321955.1",
                "gtdb_species": "s__UBA636 sp900321955",
                "ani": 97.8809,
                "matched_fragments": 331,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__UBA636",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.85",
                "min_intra_species_ani": "96.88",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 28,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017428765.1",
                "gtdb_species": "s__UBA636 sp017428765",
                "ani": 81.6534,
                "matched_fragments": 327,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__UBA636",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.78",
                "min_intra_species_ani": "97.78",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002362065.1",
                "gtdb_species": "s__UBA636 sp002362065",
                "ani": 81.1719,
                "matched_fragments": 271,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__UBA636",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017419165.1",
                "gtdb_species": "s__UBA636 sp017419165",
                "ani": 80.5777,
                "matched_fragments": 256,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__UBA636",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017539025.1",
                "gtdb_species": "s__UBA636 sp017539025",
                "ani": 79.7725,
                "matched_fragments": 216,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__UBA636",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017432895.1",
                "gtdb_species": "s__UBA636 sp017432895",
                "ani": 79.3579,
                "matched_fragments": 239,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__UBA636",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017432005.1",
                "gtdb_species": "s__UBA636 sp017432005",
                "ani": 79.2428,
                "matched_fragments": 182,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__UBA636",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017454765.1",
                "gtdb_species": "s__UBA636 sp017454765",
                "ani": 79.2394,
                "matched_fragments": 209,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__UBA636",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902795875.1",
                "gtdb_species": "s__UBA636 sp902795875",
                "ani": 78.5335,
                "matched_fragments": 186,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__UBA636",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.333,
        "cell_length": 0.183,
        "doubling_h": null,
        "growth_tmp": 36.057,
        "optimum_tmp": 36.214,
        "optimum_ph": 7.27,
        "genome_size": 2715599.544,
        "gc_content": 38.082,
        "coding_genes": 2417.7,
        "rRNA16S_genes": 7.3,
        "tRNA_genes": 50.0,
        "gram_stain": 1.0,
        "sporulation": 0.235,
        "motility": 0.3,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.869,
        "aerobic_respiration": 0.13,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.933,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.066
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__Erysipelotrichales",
        "f__Erysipelotrichaceae",
        "g__UBA636",
        "s__UBA636 sp900321955"
    ],
    "_genome_taxon": [
        "uncultured",
        "Erysipelotrichaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__Erysipelotrichales",
        "f__Erysipelotrichaceae",
        "g__UBA636",
        "s__UBA636 sp900321955",
        "Bacteria",
        "Bacillota",
        "I",
        "Bacilli",
        "A",
        "Erysipelotrichales",
        "Erysipelotrichaceae",
        "UBA636",
        "UBA636",
        "sp900321955"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}