{
    "type": "genome",
    "identifier": "GCA_902778885.1",
    "organism": "Oscillospiraceae bacterium",
    "title": "Oscillospiraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902778885.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6150552",
        "wgs_master": "CACYZP000000000.1",
        "refseq_category": "na",
        "taxid": "2485925",
        "species_taxid": "2485925",
        "organism_name": "Oscillospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "RUG12416",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG12416",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/778/885/GCA_902778885.1_Rumen_uncultured_genome_RUG12416",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oscillospiraceae bacterium"
        ],
        "sample_taxid": [
            "2485925"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.533 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1886833",
        "Number of Sequences": "170",
        "Longest Sequences (bp)": "59194",
        "N50 (bp)": "16035",
        "Gap Ratio (%)": "0.009487",
        "GCcontent (%)": "58.1",
        "Number of CDSs": "1627",
        "Average Protein Length": "312.6",
        "Coding Ratio (%)": "80.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900317085.1",
                "gtdb_species": "s__RUG420 sp900317085",
                "ani": 99.1156,
                "matched_fragments": 481,
                "total_fragments": 548,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__RUG420",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.92",
                "min_intra_species_ani": "97.74",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 42,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017461005.1",
                "gtdb_species": "s__RUG420 sp017461005",
                "ani": 91.2178,
                "matched_fragments": 452,
                "total_fragments": 548,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__RUG420",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900317985.1",
                "gtdb_species": "s__RUG420 sp900317985",
                "ani": 89.5375,
                "matched_fragments": 429,
                "total_fragments": 548,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__RUG420",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 49,
                "status": "-"
            },
            {
                "accession": "GCA_017433225.1",
                "gtdb_species": "s__RUG420 sp017433225",
                "ani": 89.3313,
                "matched_fragments": 475,
                "total_fragments": 548,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__RUG420",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.27",
                "min_intra_species_ani": "96.19",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_904502175.1",
                "gtdb_species": "s__RUG420 sp904502175",
                "ani": 83.8455,
                "matched_fragments": 286,
                "total_fragments": 548,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__RUG420",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017476565.1",
                "gtdb_species": "s__RUG420 sp017476565",
                "ani": 82.4486,
                "matched_fragments": 283,
                "total_fragments": 548,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__RUG420",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.44",
                "min_intra_species_ani": "98.44",
                "mean_intra_species_af": "0.71",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.397,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 6.25,
        "genome_size": 4470621.5,
        "gc_content": 49.895,
        "coding_genes": 4347.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 61.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__RUG420",
        "s__RUG420 sp900317085"
    ],
    "_genome_taxon": [
        "Oscillospiraceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__RUG420",
        "s__RUG420 sp900317085",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Acutalibacteraceae",
        "RUG420",
        "RUG420",
        "sp900317085"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}