{
    "type": "genome",
    "identifier": "GCA_902779075.1",
    "organism": "uncultured bacterium",
    "title": "uncultured bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902779075.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6150568",
        "wgs_master": "CACZAK000000000.1",
        "refseq_category": "na",
        "taxid": "77133",
        "species_taxid": "77133",
        "organism_name": "uncultured bacterium",
        "infraspecific_name": "",
        "isolate": "RUG12432",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/17",
        "asm_name": "Rumen uncultured genome RUG12432",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/779/075/GCA_902779075.1_Rumen_uncultured_genome_RUG12432",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-17",
    "dateModified": "2020-02-17",
    "datePublished": "2020-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured bacterium"
        ],
        "sample_taxid": [
            "77133"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "1.869 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 75.12,
        "contamination": 1.85,
        "strain_heterogeneity": 20.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "6609905",
        "Number of Sequences": "453",
        "Longest Sequences (bp)": "117139",
        "N50 (bp)": "25250",
        "Gap Ratio (%)": "0.001740",
        "GCcontent (%)": "59.8",
        "Number of CDSs": "4515",
        "Average Protein Length": "399.7",
        "Coding Ratio (%)": "81.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Oharaeibacter diazotrophicus",
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                "accession": "GCA_004362745.1",
                "taxid": 1920512,
                "species_taxid": 1920512,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 56,
                "total_fragments": 1982,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium nodulans",
                "strain": "strain=ORS 2060",
                "accession": "GCA_000022085.1",
                "taxid": 114616,
                "species_taxid": 114616,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6955,
                "matched_fragments": 53,
                "total_fragments": 1982,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraconexibacter algicola",
                "strain": "strain=Seoho-28",
                "accession": "GCA_003044185.1",
                "taxid": 2133960,
                "species_taxid": 2133960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6847,
                "matched_fragments": 52,
                "total_fragments": 1982,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium nonmethylotrophicum",
                "strain": "strain=6HR-1",
                "accession": "GCA_004745635.1",
                "taxid": 1141884,
                "species_taxid": 1141884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6738,
                "matched_fragments": 58,
                "total_fragments": 1982,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium tarhaniae",
                "strain": "strain=DSM 25844",
                "accession": "GCA_001043955.1",
                "taxid": 1187852,
                "species_taxid": 1187852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.641,
                "matched_fragments": 54,
                "total_fragments": 1982,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 75.12,
            "contamination": 1.85,
            "strain_heterogeneity": 20.0
        },
        "gtdb_result": [
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                "accession": "GCA_902779075.1",
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                "ani": 100.0,
                "matched_fragments": 1958,
                "total_fragments": 1982,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__RUG572",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902761035.1",
                "gtdb_species": "s__RUG572 sp902761035",
                "ani": 93.8815,
                "matched_fragments": 1301,
                "total_fragments": 1982,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__RUG572",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902802945.1",
                "gtdb_species": "s__RUG572 sp902802945",
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                "matched_fragments": 1162,
                "total_fragments": 1982,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__RUG572",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.75",
                "min_intra_species_ani": "96.49",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902779865.1",
                "gtdb_species": "s__RUG572 sp902779865",
                "ani": 86.1011,
                "matched_fragments": 830,
                "total_fragments": 1982,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__RUG572",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.47",
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                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900320225.1",
                "gtdb_species": "s__RUG572 sp900320225",
                "ani": 84.22,
                "matched_fragments": 699,
                "total_fragments": 1982,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__RUG572",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.22",
                "min_intra_species_ani": "98.67",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017427485.1",
                "gtdb_species": "s__RUG572 sp017427485",
                "ani": 83.6562,
                "matched_fragments": 737,
                "total_fragments": 1982,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__RUG572",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017430155.1",
                "gtdb_species": "s__RUG572 sp017430155",
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                "matched_fragments": 446,
                "total_fragments": 1982,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__RUG572",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902763655.1",
                "gtdb_species": "s__RUG572 sp902763655",
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                "matched_fragments": 438,
                "total_fragments": 1982,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__RUG572",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902769585.1",
                "gtdb_species": "s__RUG572 sp902769585",
                "ani": 80.0491,
                "matched_fragments": 500,
                "total_fragments": 1982,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__RUG572",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900547945.1",
                "gtdb_species": "s__RUG572 sp900547945",
                "ani": 79.5937,
                "matched_fragments": 333,
                "total_fragments": 1982,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__RUG572",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "98.30",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 3,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Verrucomicrobiota",
        "c__Kiritimatiellia",
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        "f__UBA1067",
        "g__RUG572",
        "s__RUG572 sp902779075"
    ],
    "_genome_taxon": [
        "uncultured",
        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Kiritimatiellia",
        "o__RFP12",
        "f__UBA1067",
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        "s__RUG572 sp902779075",
        "Bacteria",
        "Verrucomicrobiota",
        "Kiritimatiellia",
        "RFP12",
        "UBA1067",
        "RUG572",
        "RUG572",
        "sp902779075"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}