{
    "type": "genome",
    "identifier": "GCA_902780085.1",
    "organism": "uncultured proteobacterium",
    "title": "uncultured proteobacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902780085.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6150673",
        "wgs_master": "CACZEE000000000.1",
        "refseq_category": "na",
        "taxid": "153809",
        "species_taxid": "153809",
        "organism_name": "uncultured proteobacterium",
        "infraspecific_name": "",
        "isolate": "RUG12537",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/14",
        "asm_name": "Rumen uncultured genome RUG12537",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/780/085/GCA_902780085.1_Rumen_uncultured_genome_RUG12537",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-14",
    "dateModified": "2020-02-14",
    "datePublished": "2020-02-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured proteobacterium"
        ],
        "sample_taxid": [
            "153809"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.351 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 80.56,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1240254",
        "Number of Sequences": "213",
        "Longest Sequences (bp)": "32663",
        "N50 (bp)": "7392",
        "Gap Ratio (%)": "0.029349",
        "GCcontent (%)": "39.2",
        "Number of CDSs": "1124",
        "Average Protein Length": "269.6",
        "Coding Ratio (%)": "73.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 80.56,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900313355.1",
                "gtdb_species": "s__UBA1254 sp900313355",
                "ani": 95.9068,
                "matched_fragments": 193,
                "total_fragments": 300,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__UBA1254",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.65",
                "min_intra_species_ani": "96.12",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.66",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_905235385.1",
                "gtdb_species": "s__UBA1254 sp905235385",
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                "matched_fragments": 243,
                "total_fragments": 300,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__UBA1254",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002308495.1",
                "gtdb_species": "s__UBA1254 sp002308495",
                "ani": 82.4077,
                "matched_fragments": 146,
                "total_fragments": 300,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__UBA1254",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "99.16",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003542415.1",
                "gtdb_species": "s__UBA1254 sp003542415",
                "ani": 80.3777,
                "matched_fragments": 130,
                "total_fragments": 300,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__UBA1254",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017475525.1",
                "gtdb_species": "s__UBA1254 sp017475525",
                "ani": 79.7695,
                "matched_fragments": 143,
                "total_fragments": 300,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__UBA1254",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902785935.1",
                "gtdb_species": "s__UBA1254 sp902785935",
                "ani": 78.0861,
                "matched_fragments": 83,
                "total_fragments": 300,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__UBA1254",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902767055.1",
                "gtdb_species": "s__UBA1254 sp902767055",
                "ani": 77.9645,
                "matched_fragments": 74,
                "total_fragments": 300,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__UBA1254",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.71",
                "min_intra_species_ani": "97.71",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017645485.1",
                "gtdb_species": "s__UBA1254 sp017645485",
                "ani": 77.9002,
                "matched_fragments": 73,
                "total_fragments": 300,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__UBA1254",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.12",
                "min_intra_species_ani": "96.12",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__RF32",
        "f__CAG-239",
        "g__UBA1254",
        "s__UBA1254 sp900313355"
    ],
    "_genome_taxon": [
        "uncultured",
        "proteobacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__RF32",
        "f__CAG-239",
        "g__UBA1254",
        "s__UBA1254 sp900313355",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "RF32",
        "CAG-239",
        "UBA1254",
        "UBA1254",
        "sp900313355"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}