{
    "type": "genome",
    "identifier": "GCA_902781425.1",
    "organism": "uncultured Bacteroidia bacterium",
    "title": "uncultured Bacteroidia bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902781425.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6150808",
        "wgs_master": "CACZJH000000000.1",
        "refseq_category": "na",
        "taxid": "1129257",
        "species_taxid": "1129257",
        "organism_name": "uncultured Bacteroidia bacterium",
        "infraspecific_name": "",
        "isolate": "RUG12672",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/17",
        "asm_name": "Rumen uncultured genome RUG12672",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/781/425/GCA_902781425.1_Rumen_uncultured_genome_RUG12672",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-17",
    "dateModified": "2020-02-17",
    "datePublished": "2020-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Bacteroidia bacterium"
        ],
        "sample_taxid": [
            "1129257"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.707 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2480384",
        "Number of Sequences": "42",
        "Longest Sequences (bp)": "196528",
        "N50 (bp)": "112230",
        "Gap Ratio (%)": "0.005201",
        "GCcontent (%)": "56.0",
        "Number of CDSs": "1996",
        "Average Protein Length": "384.8",
        "Coding Ratio (%)": "92.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_002354005.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.47",
                "min_intra_species_ani": "96.01",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 14,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900317845.1",
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                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 22,
                "status": "-"
            },
            {
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                "min_intra_species_ani": "97.48",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
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                "matched_fragments": 456,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.63",
                "min_intra_species_ani": "97.63",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902794005.1",
                "gtdb_species": "s__Cryptobacteroides sp902794005",
                "ani": 81.5437,
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                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.50",
                "min_intra_species_ani": "98.20",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017447815.1",
                "gtdb_species": "s__Cryptobacteroides sp017447815",
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                "matched_fragments": 390,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_species": "s__Cryptobacteroides sp900318445",
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                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
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                "mean_intra_species_ani": "96.95",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_902784435.1",
                "gtdb_species": "s__Cryptobacteroides sp902784435",
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                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902794615.1",
                "gtdb_species": "s__Cryptobacteroides sp902794615",
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                "matched_fragments": 319,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.63",
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                "status": "-"
            },
            {
                "accession": "GCA_017480345.1",
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                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
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                "mean_intra_species_ani": "98.06",
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                "mean_intra_species_af": "0.83",
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                "status": "-"
            },
            {
                "accession": "GCA_902774155.1",
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                "matched_fragments": 388,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
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            },
            {
                "accession": "GCA_905234795.1",
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                "matched_fragments": 401,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900321655.1",
                "gtdb_species": "s__Cryptobacteroides sp900321655",
                "ani": 80.3715,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
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                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCA_900319405.1",
                "gtdb_species": "s__Cryptobacteroides sp900319405",
                "ani": 80.3095,
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                "mean_intra_species_ani": "100.00",
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                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__UBA932",
        "g__Cryptobacteroides",
        "s__Cryptobacteroides sp002354005"
    ],
    "_genome_taxon": [
        "uncultured",
        "Bacteroidia",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__UBA932",
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        "s__Cryptobacteroides sp002354005",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "UBA932",
        "Cryptobacteroides",
        "Cryptobacteroides",
        "sp002354005"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}