{
    "type": "genome",
    "identifier": "GCA_902781695.1",
    "organism": "uncultured Selenomonas sp.",
    "title": "uncultured Selenomonas sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902781695.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6150840",
        "wgs_master": "CACZKP000000000.1",
        "refseq_category": "na",
        "taxid": "159275",
        "species_taxid": "159275",
        "organism_name": "uncultured Selenomonas sp.",
        "infraspecific_name": "",
        "isolate": "RUG12704",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/17",
        "asm_name": "Rumen uncultured genome RUG12704",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/781/695/GCA_902781695.1_Rumen_uncultured_genome_RUG12704",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-17",
    "dateModified": "2020-02-17",
    "datePublished": "2020-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Selenomonas sp."
        ],
        "sample_taxid": [
            "159275"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.781 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2803592",
        "Number of Sequences": "240",
        "Longest Sequences (bp)": "73213",
        "N50 (bp)": "17327",
        "Gap Ratio (%)": "0.002461",
        "GCcontent (%)": "59.1",
        "Number of CDSs": "2523",
        "Average Protein Length": "304.8",
        "Coding Ratio (%)": "82.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mitsuokella multacida",
                "strain": "strain=DSM 20544",
                "accession": "GCA_000155955.1",
                "taxid": 52226,
                "species_taxid": 52226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.957,
                "matched_fragments": 348,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mitsuokella jalaludinii",
                "strain": "strain=DSM 13811",
                "accession": "GCA_000702905.1",
                "taxid": 187979,
                "species_taxid": 187979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7819,
                "matched_fragments": 340,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas sputigena",
                "strain": "strain=ATCC 35185",
                "accession": "GCA_000208405.1",
                "taxid": 69823,
                "species_taxid": 69823,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 77.8141,
                "matched_fragments": 215,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas sputigena",
                "strain": "strain=ATCC 35185",
                "accession": "GCA_000160495.1",
                "taxid": 69823,
                "species_taxid": 69823,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 77.7344,
                "matched_fragments": 217,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas montiformis",
                "strain": "strain=WCA-380-WT-3B3",
                "accession": "GCA_009697385.1",
                "taxid": 2652285,
                "species_taxid": 2652285,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4527,
                "matched_fragments": 139,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas artemidis",
                "strain": "strain=DSM 19719",
                "accession": "GCA_000426665.1",
                "taxid": 671224,
                "species_taxid": 671224,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.447,
                "matched_fragments": 133,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas ruminantium subsp. ruminantium",
                "strain": "strain=ATCC 12561",
                "accession": "GCA_000424065.1",
                "taxid": 114196,
                "species_taxid": 971,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2785,
                "matched_fragments": 93,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas flueggei",
                "strain": "strain=ATCC 43531",
                "accession": "GCA_000160695.1",
                "taxid": 135080,
                "species_taxid": 135080,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2001,
                "matched_fragments": 125,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes digitatis",
                "strain": "strain=DSM 43149",
                "accession": "GCA_014205335.1",
                "taxid": 1868,
                "species_taxid": 1868,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1049,
                "matched_fragments": 54,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902780535.1",
                "gtdb_species": "s__Selenomonas_C sp902780535",
                "ani": 97.1803,
                "matched_fragments": 665,
                "total_fragments": 817,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.25",
                "min_intra_species_ani": "96.14",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900318215.1",
                "gtdb_species": "s__Selenomonas_C sp900318215",
                "ani": 93.9543,
                "matched_fragments": 538,
                "total_fragments": 817,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "97.85",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900315575.1",
                "gtdb_species": "s__Selenomonas_C sp900315575",
                "ani": 92.6224,
                "matched_fragments": 601,
                "total_fragments": 817,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "97.63",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900314825.1",
                "gtdb_species": "s__Selenomonas_C sp900314825",
                "ani": 84.0126,
                "matched_fragments": 543,
                "total_fragments": 817,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000381005.1",
                "gtdb_species": "s__Selenomonas_C bovis",
                "ani": 81.7448,
                "matched_fragments": 417,
                "total_fragments": 817,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.36",
                "min_intra_species_ani": "95.92",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_902763085.1",
                "gtdb_species": "s__Selenomonas_C sp002351185",
                "ani": 81.6155,
                "matched_fragments": 380,
                "total_fragments": 817,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.44",
                "min_intra_species_ani": "97.41",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000702905.1",
                "gtdb_species": "s__Mitsuokella jalaludinii",
                "ani": 80.8181,
                "matched_fragments": 338,
                "total_fragments": 817,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.12",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 11,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.045,
        "cell_length": 0.585,
        "doubling_h": 0.403,
        "growth_tmp": 36.9,
        "optimum_tmp": 38.444,
        "optimum_ph": 7.1,
        "genome_size": 2486055.234,
        "gc_content": 54.791,
        "coding_genes": 2841.5,
        "rRNA16S_genes": 5.5,
        "tRNA_genes": 62.5,
        "gram_stain": 0.142,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.142,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.857,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Selenomonadales",
        "f__Selenomonadaceae",
        "g__Selenomonas_C",
        "s__Selenomonas_C sp902780535"
    ],
    "_genome_taxon": [
        "uncultured",
        "Selenomonas",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Selenomonadales",
        "f__Selenomonadaceae",
        "g__Selenomonas_C",
        "s__Selenomonas_C sp902780535",
        "Bacteria",
        "Bacillota",
        "C",
        "Negativicutes",
        "Selenomonadales",
        "Selenomonadaceae",
        "Selenomonas",
        "C",
        "Selenomonas",
        "C",
        "sp902780535"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}