{
    "type": "genome",
    "identifier": "GCA_902781705.1",
    "organism": "uncultured Bacteroidia bacterium",
    "title": "uncultured Bacteroidia bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902781705.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6150839",
        "wgs_master": "CACZKE000000000.1",
        "refseq_category": "na",
        "taxid": "1129257",
        "species_taxid": "1129257",
        "organism_name": "uncultured Bacteroidia bacterium",
        "infraspecific_name": "",
        "isolate": "RUG12703",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/17",
        "asm_name": "Rumen uncultured genome RUG12703",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/781/705/GCA_902781705.1_Rumen_uncultured_genome_RUG12703",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-17",
    "dateModified": "2020-02-17",
    "datePublished": "2020-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Bacteroidia bacterium"
        ],
        "sample_taxid": [
            "1129257"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.866 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3067297",
        "Number of Sequences": "43",
        "Longest Sequences (bp)": "272352",
        "N50 (bp)": "102943",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.0",
        "Number of CDSs": "2419",
        "Average Protein Length": "394.6",
        "Coding Ratio (%)": "93.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Alistipes provencensis",
                "strain": "strain=Marseille-P2431",
                "accession": "GCA_900083545.1",
                "taxid": 1816676,
                "species_taxid": 1816676,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2255,
                "matched_fragments": 52,
                "total_fragments": 1004,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes dispar",
                "strain": "strain=5CPEGH6",
                "accession": "GCA_006542685.1",
                "taxid": 2585119,
                "species_taxid": 2585119,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1225,
                "matched_fragments": 67,
                "total_fragments": 1004,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes shahii",
                "strain": "strain=WAL 8301",
                "accession": "GCA_025145845.1",
                "taxid": 328814,
                "species_taxid": 328814,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.1044,
                "matched_fragments": 60,
                "total_fragments": 1004,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes onderdonkii subsp. vulgaris",
                "strain": "strain=3BBH6",
                "accession": "GCA_006542645.1",
                "taxid": 2585117,
                "species_taxid": 328813,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0236,
                "matched_fragments": 50,
                "total_fragments": 1004,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes senegalensis",
                "strain": "strain=JC50",
                "accession": "GCA_025145645.1",
                "taxid": 1288121,
                "species_taxid": 1288121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0049,
                "matched_fragments": 69,
                "total_fragments": 1004,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes shahii",
                "strain": "strain=WAL 8301",
                "accession": "GCA_000210575.1",
                "taxid": 328814,
                "species_taxid": 328814,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 75.9786,
                "matched_fragments": 60,
                "total_fragments": 1004,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes senegalensis",
                "strain": "strain=JC50",
                "accession": "GCA_000312145.1",
                "taxid": 1288121,
                "species_taxid": 1288121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9087,
                "matched_fragments": 71,
                "total_fragments": 1004,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes senegalensis",
                "strain": "strain=FDAARGOS_1578",
                "accession": "GCA_020735725.1",
                "taxid": 1288121,
                "species_taxid": 1288121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9065,
                "matched_fragments": 74,
                "total_fragments": 1004,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes timonensis",
                "strain": "strain=DSM 25383",
                "accession": "GCA_900107675.1",
                "taxid": 1465754,
                "species_taxid": 1465754,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6886,
                "matched_fragments": 58,
                "total_fragments": 1004,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902781705.1",
                "gtdb_species": "s__Cryptobacteroides sp902781705",
                "ani": 100.0,
                "matched_fragments": 1000,
                "total_fragments": 1004,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.56",
                "min_intra_species_ani": "96.56",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002361625.1",
                "gtdb_species": "s__Cryptobacteroides sp002361625",
                "ani": 90.4322,
                "matched_fragments": 696,
                "total_fragments": 1004,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.42",
                "min_intra_species_ani": "96.65",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_017464245.1",
                "gtdb_species": "s__Cryptobacteroides sp017464245",
                "ani": 87.0363,
                "matched_fragments": 566,
                "total_fragments": 1004,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902778105.1",
                "gtdb_species": "s__Cryptobacteroides sp902778105",
                "ani": 85.5519,
                "matched_fragments": 570,
                "total_fragments": 1004,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "97.21",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900316525.1",
                "gtdb_species": "s__Cryptobacteroides sp900316525",
                "ani": 85.1054,
                "matched_fragments": 635,
                "total_fragments": 1004,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.78",
                "min_intra_species_ani": "96.71",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_017429205.1",
                "gtdb_species": "s__Cryptobacteroides sp017429205",
                "ani": 85.0701,
                "matched_fragments": 527,
                "total_fragments": 1004,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900316955.1",
                "gtdb_species": "s__Cryptobacteroides sp900316955",
                "ani": 85.0143,
                "matched_fragments": 619,
                "total_fragments": 1004,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902785065.1",
                "gtdb_species": "s__Cryptobacteroides sp902785065",
                "ani": 84.4879,
                "matched_fragments": 569,
                "total_fragments": 1004,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.77",
                "min_intra_species_ani": "97.77",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900318015.1",
                "gtdb_species": "s__Cryptobacteroides sp900318015",
                "ani": 84.0019,
                "matched_fragments": 571,
                "total_fragments": 1004,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.28",
                "min_intra_species_ani": "97.03",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_017395045.1",
                "gtdb_species": "s__Cryptobacteroides sp017395045",
                "ani": 83.4621,
                "matched_fragments": 515,
                "total_fragments": 1004,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017558775.1",
                "gtdb_species": "s__Cryptobacteroides sp017558775",
                "ani": 83.1939,
                "matched_fragments": 497,
                "total_fragments": 1004,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017439305.1",
                "gtdb_species": "s__Cryptobacteroides sp017439305",
                "ani": 83.1194,
                "matched_fragments": 531,
                "total_fragments": 1004,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017530725.1",
                "gtdb_species": "s__Cryptobacteroides sp017530725",
                "ani": 83.0895,
                "matched_fragments": 439,
                "total_fragments": 1004,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__UBA932",
        "g__Cryptobacteroides",
        "s__Cryptobacteroides sp902781705"
    ],
    "_genome_taxon": [
        "uncultured",
        "Bacteroidia",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__UBA932",
        "g__Cryptobacteroides",
        "s__Cryptobacteroides sp902781705",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "UBA932",
        "Cryptobacteroides",
        "Cryptobacteroides",
        "sp902781705"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}