{ "type": "genome", "identifier": "GCA_902782775.1", "organism": "uncultured Lachnospiraceae bacterium", "title": "uncultured Lachnospiraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902782775.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6150932", "wgs_master": "CACZOK000000000.1", "refseq_category": "na", "taxid": "297314", "species_taxid": "297314", "organism_name": "uncultured Lachnospiraceae bacterium", "infraspecific_name": "", "isolate": "RUG12796", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/15", "asm_name": "Rumen uncultured genome RUG12796", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/782/775/GCA_902782775.1_Rumen_uncultured_genome_RUG12796", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-15", "dateModified": "2020-02-15", "datePublished": "2020-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lachnospiraceae bacterium" ], "sample_taxid": [ "297314" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.524 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 86.98, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1893272", "Number of Sequences": "123", "Longest Sequences (bp)": "117168", "N50 (bp)": "28755", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.4", "Number of CDSs": "1581", "Average Protein Length": "340.3", "Coding Ratio (%)": "85.3", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Eubacterium ventriosum", "strain": "strain=ATCC 27560", "accession": "GCA_025150745.1", "taxid": 39496, "species_taxid": 39496, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3968, "matched_fragments": 81, "total_fragments": 560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eubacterium ventriosum", "strain": "strain=ATCC 27560", "accession": "GCA_000153885.1", "taxid": 39496, "species_taxid": 39496, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3274, "matched_fragments": 83, "total_fragments": 560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnospira eligens", "strain": "strain=ATCC 27750", "accession": "GCA_000146185.1", "taxid": 39485, "species_taxid": 39485, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9078, "matched_fragments": 61, "total_fragments": 560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnospira multipara", "strain": "strain=ATCC 19207", "accession": "GCA_000424105.1", "taxid": 28051, "species_taxid": 28051, "relation_to_type": "type", "validated": true, "ani": 76.6797, "matched_fragments": 58, "total_fragments": 560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eubacterium ruminantium", "strain": "strain=ATCC 17233", "accession": "GCA_900167085.1", "taxid": 42322, "species_taxid": 42322, "relation_to_type": "type", "validated": true, "ani": 76.4281, "matched_fragments": 50, "total_fragments": 560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetitomaculum ruminis", "strain": "strain=DSM 5522", "accession": "GCA_900112085.1", "taxid": 2382, "species_taxid": 2382, "relation_to_type": "type", "validated": true, "ani": 76.0609, "matched_fragments": 50, "total_fragments": 560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Velocimicrobium porci", "strain": "strain=WCA-693-APC-MOT-I", "accession": "GCA_009696045.1", "taxid": 2606634, "species_taxid": 2606634, "relation_to_type": "type", "validated": true, "ani": 76.0344, "matched_fragments": 50, "total_fragments": 560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] fimetarium", "strain": "strain=DSM 9179", "accession": "GCA_900111235.1", "taxid": 99656, "species_taxid": 99656, "relation_to_type": "type", "validated": true, "ani": 75.5823, "matched_fragments": 56, "total_fragments": 560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mobilisporobacter senegalensis", "strain": "strain=DSM 26537", "accession": "GCA_003752155.1", "taxid": 1329262, "species_taxid": 1329262, "relation_to_type": "type", "validated": true, "ani": 75.5388, "matched_fragments": 51, "total_fragments": 560, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 86.98, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900110975.1", "gtdb_species": "s__CAG-603 sp900110975", "ani": 98.3874, "matched_fragments": 535, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-603", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_902362455.1", "gtdb_species": "s__CAG-603 sp900066105", "ani": 77.9826, 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