{ "type": "genome", "identifier": "GCA_902782885.1", "organism": "uncultured Ruminococcus sp.", "title": "uncultured Ruminococcus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902782885.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6150959", "wgs_master": "CACZOW000000000.1", "refseq_category": "na", "taxid": "165186", "species_taxid": "165186", "organism_name": "uncultured Ruminococcus sp.", "infraspecific_name": "", "isolate": "RUG12823", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/15", "asm_name": "Rumen uncultured genome RUG12823", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/782/885/GCA_902782885.1_Rumen_uncultured_genome_RUG12823", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-15", "dateModified": "2020-02-15", "datePublished": "2020-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Ruminococcus sp." ], "sample_taxid": [ "165186" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.585 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 58.33, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2061509", "Number of Sequences": "359", "Longest Sequences (bp)": "30789", "N50 (bp)": "6927", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.7", "Number of CDSs": "1353", "Average Protein Length": "373.1", "Coding Ratio (%)": "73.5", "Number of rRNAs": "0", "Number of tRNAs": "24", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 58.33, "contamination": 2.08, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902782885.1", "gtdb_species": "s__UBA1255 sp902782885", "ani": 100.0, "matched_fragments": 485, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1255;g__UBA1255", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.39", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.72", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_017620915.1", "gtdb_species": "s__UBA1255 sp017620915", "ani": 86.8172, "matched_fragments": 401, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1255;g__UBA1255", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002308795.1", "gtdb_species": "s__UBA1255 sp002308795", "ani": 78.6506, "matched_fragments": 120, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1255;g__UBA1255", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.61", "min_intra_species_ani": "97.61", "mean_intra_species_af": "0.73", "min_intra_species_af": "0.73", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017508875.1", "gtdb_species": "s__UBA1255 sp017508875", "ani": 78.4254, "matched_fragments": 150, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1255;g__UBA1255", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.48", "min_intra_species_ani": "97.48", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016287565.1", "gtdb_species": "s__UBA1255 sp016287565", "ani": 78.2367, "matched_fragments": 203, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1255;g__UBA1255", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017613535.1", "gtdb_species": "s__UBA1255 sp017613535", "ani": 78.0887, "matched_fragments": 147, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1255;g__UBA1255", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017963755.1", "gtdb_species": "s__UBA1255 sp017963755", "ani": 78.0738, "matched_fragments": 129, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1255;g__UBA1255", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902796205.1", "gtdb_species": "s__UBA1255 sp902796205", "ani": 77.194, "matched_fragments": 99, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1255;g__UBA1255", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.18, "cell_length": -0.18, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.7, "optimum_ph": 7.0, "genome_size": 3334855.36, "gc_content": 43.875, "coding_genes": 2772.666, "rRNA16S_genes": 4.0, "tRNA_genes": 64.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__UBA1212", "f__UBA1255", "g__UBA1255", "s__UBA1255 sp902782885" ], "_genome_taxon": [ "uncultured", "Ruminococcus", "sp.", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__UBA1212", "f__UBA1255", "g__UBA1255", "s__UBA1255 sp902782885", "Bacteria", "Bacillota", "A", "Clostridia", "UBA1212", "UBA1255", "UBA1255", "UBA1255", "sp902782885" ], "_meo": [ { "id": "MEO_0000046", "label": "rumen" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }