{
    "type": "genome",
    "identifier": "GCA_902783745.1",
    "organism": "uncultured Erysipelotrichaceae bacterium",
    "title": "uncultured Erysipelotrichaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902783745.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6151035",
        "wgs_master": "CACZRY000000000.1",
        "refseq_category": "na",
        "taxid": "331630",
        "species_taxid": "331630",
        "organism_name": "uncultured Erysipelotrichaceae bacterium",
        "infraspecific_name": "",
        "isolate": "RUG12899",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/14",
        "asm_name": "Rumen uncultured genome RUG12899",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/783/745/GCA_902783745.1_Rumen_uncultured_genome_RUG12899",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-14",
    "dateModified": "2020-02-14",
    "datePublished": "2020-02-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Erysipelotrichaceae bacterium"
        ],
        "sample_taxid": [
            "331630"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.393 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 73.26,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1442291",
        "Number of Sequences": "217",
        "Longest Sequences (bp)": "27541",
        "N50 (bp)": "8478",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "28.1",
        "Number of CDSs": "1137",
        "Average Protein Length": "318.2",
        "Coding Ratio (%)": "75.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "15",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Anaeroplasma bactoclasticum",
                "strain": "strain=ATCC 27112",
                "accession": "GCA_003550015.1",
                "taxid": 2088,
                "species_taxid": 2088,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4534,
                "matched_fragments": 93,
                "total_fragments": 364,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 73.26,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902783745.1",
                "gtdb_species": "s__Anaeroplasma sp902783745",
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                "matched_fragments": 357,
                "total_fragments": 364,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016288855.1",
                "gtdb_species": "s__Anaeroplasma sp016288855",
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                "matched_fragments": 291,
                "total_fragments": 364,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017441525.1",
                "gtdb_species": "s__Anaeroplasma sp017441525",
                "ani": 78.2485,
                "matched_fragments": 112,
                "total_fragments": 364,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017542485.1",
                "gtdb_species": "s__Anaeroplasma sp017542485",
                "ani": 77.7121,
                "matched_fragments": 89,
                "total_fragments": 364,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017449215.1",
                "gtdb_species": "s__Anaeroplasma sp017449215",
                "ani": 77.7081,
                "matched_fragments": 120,
                "total_fragments": 364,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.35",
                "min_intra_species_ani": "95.35",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003550015.1",
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                "ani": 77.4856,
                "matched_fragments": 92,
                "total_fragments": 364,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017524905.1",
                "gtdb_species": "s__Anaeroplasma sp017524905",
                "ani": 77.4679,
                "matched_fragments": 108,
                "total_fragments": 364,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017462645.1",
                "gtdb_species": "s__Anaeroplasma sp017462645",
                "ani": 77.3874,
                "matched_fragments": 63,
                "total_fragments": 364,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002449755.1",
                "gtdb_species": "s__Anaeroplasma sp002449755",
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                "total_fragments": 364,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "98.36",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902796895.1",
                "gtdb_species": "s__Anaeroplasma sp902796895",
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                "matched_fragments": 101,
                "total_fragments": 364,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900767915.1",
                "gtdb_species": "s__Anaeroplasma sp900767915",
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                "matched_fragments": 82,
                "total_fragments": 364,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900770055.1",
                "gtdb_species": "s__Anaeroplasma sp900770055",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.333,
        "cell_length": 0.183,
        "doubling_h": null,
        "growth_tmp": 36.057,
        "optimum_tmp": 36.214,
        "optimum_ph": 7.27,
        "genome_size": 2715599.544,
        "gc_content": 38.082,
        "coding_genes": 2417.7,
        "rRNA16S_genes": 7.3,
        "tRNA_genes": 50.0,
        "gram_stain": 1.0,
        "sporulation": 0.235,
        "motility": 0.3,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.869,
        "aerobic_respiration": 0.13,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.933,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.066
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__Acholeplasmatales",
        "f__Anaeroplasmataceae",
        "g__Anaeroplasma",
        "s__Anaeroplasma sp902783745"
    ],
    "_genome_taxon": [
        "uncultured",
        "Erysipelotrichaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__Acholeplasmatales",
        "f__Anaeroplasmataceae",
        "g__Anaeroplasma",
        "s__Anaeroplasma sp902783745",
        "Bacteria",
        "Bacillota",
        "I",
        "Bacilli",
        "A",
        "Acholeplasmatales",
        "Anaeroplasmataceae",
        "Anaeroplasma",
        "Anaeroplasma",
        "sp902783745"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}