{
    "type": "genome",
    "identifier": "GCA_902786085.1",
    "organism": "uncultured Veillonellaceae bacterium",
    "title": "uncultured Veillonellaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902786085.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6151277",
        "wgs_master": "CADABB000000000.1",
        "refseq_category": "na",
        "taxid": "194923",
        "species_taxid": "194923",
        "organism_name": "uncultured Veillonellaceae bacterium",
        "infraspecific_name": "",
        "isolate": "RUG13140",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG13140",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/786/085/GCA_902786085.1_Rumen_uncultured_genome_RUG13140",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Veillonellaceae bacterium"
        ],
        "sample_taxid": [
            "194923"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.658 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 75.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2332235",
        "Number of Sequences": "58",
        "Longest Sequences (bp)": "318736",
        "N50 (bp)": "72650",
        "Gap Ratio (%)": "0.001758",
        "GCcontent (%)": "58.9",
        "Number of CDSs": "2114",
        "Average Protein Length": "321.0",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Mitsuokella multacida",
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                "accession": "GCA_000155955.1",
                "taxid": 52226,
                "species_taxid": 52226,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 320,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mitsuokella jalaludinii",
                "strain": "strain=DSM 13811",
                "accession": "GCA_000702905.1",
                "taxid": 187979,
                "species_taxid": 187979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0457,
                "matched_fragments": 307,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas montiformis",
                "strain": "strain=WCA-380-WT-3B3",
                "accession": "GCA_009697385.1",
                "taxid": 2652285,
                "species_taxid": 2652285,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4466,
                "matched_fragments": 141,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas infelix",
                "strain": "strain=ATCC 43532",
                "accession": "GCA_000234095.1",
                "taxid": 135082,
                "species_taxid": 135082,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9878,
                "matched_fragments": 102,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas artemidis",
                "strain": "strain=DSM 19719",
                "accession": "GCA_000426665.1",
                "taxid": 671224,
                "species_taxid": 671224,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7389,
                "matched_fragments": 109,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas sputigena",
                "strain": "strain=ATCC 35185",
                "accession": "GCA_000208405.1",
                "taxid": 69823,
                "species_taxid": 69823,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 76.6105,
                "matched_fragments": 132,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas sputigena",
                "strain": "strain=ATCC 35185",
                "accession": "GCA_000160495.1",
                "taxid": 69823,
                "species_taxid": 69823,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 76.6045,
                "matched_fragments": 138,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 75.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900316275.1",
                "gtdb_species": "s__UBA2897 sp900316275",
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                "matched_fragments": 642,
                "total_fragments": 749,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__UBA2897",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002350105.1",
                "gtdb_species": "s__UBA2897 sp002350105",
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                "matched_fragments": 490,
                "total_fragments": 749,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__UBA2897",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "98.43",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_900315155.1",
                "gtdb_species": "s__UBA2897 sp900315155",
                "ani": 81.6917,
                "matched_fragments": 438,
                "total_fragments": 749,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__UBA2897",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.70",
                "min_intra_species_ani": "99.40",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000155955.1",
                "gtdb_species": "s__Mitsuokella multacida",
                "ani": 79.2804,
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                "total_fragments": 749,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "96.22",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000381005.1",
                "gtdb_species": "s__Selenomonas_C bovis",
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                "total_fragments": 749,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.36",
                "min_intra_species_ani": "95.92",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 11,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.12",
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            },
            {
                "accession": "GCA_902766095.1",
                "gtdb_species": "s__UBA2913 sp002349925",
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                "matched_fragments": 208,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__UBA2913",
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                "mean_intra_species_ani": "99.23",
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            },
            {
                "accession": "GCF_900113715.1",
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                "mean_intra_species_ani": "97.92",
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            },
            {
                "accession": "GCA_900770895.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__UBA2913",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.304,
        "cell_length": -0.222,
        "doubling_h": 0.262,
        "growth_tmp": 36.08,
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        "coding_genes": 1819.5,
        "rRNA16S_genes": 4.666,
        "tRNA_genes": 52.333,
        "gram_stain": 0.086,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.15,
        "coccus_cell_shape": 0.8,
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        "coccobacillus_cell_shape": 0.05,
        "vibrio_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Selenomonadales",
        "f__Selenomonadaceae",
        "g__UBA2897",
        "s__UBA2897 sp900316275"
    ],
    "_genome_taxon": [
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        "Veillonellaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Selenomonadales",
        "f__Selenomonadaceae",
        "g__UBA2897",
        "s__UBA2897 sp900316275",
        "Bacteria",
        "Bacillota",
        "C",
        "Negativicutes",
        "Selenomonadales",
        "Selenomonadaceae",
        "UBA2897",
        "UBA2897",
        "sp900316275"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}