{ "type": "genome", "identifier": "GCA_902786515.1", "organism": "uncultured Lachnospiraceae bacterium", "title": "uncultured Lachnospiraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902786515.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6151311", "wgs_master": "CADADA000000000.1", "refseq_category": "na", "taxid": "297314", "species_taxid": "297314", "organism_name": "uncultured Lachnospiraceae bacterium", "infraspecific_name": "", "isolate": "RUG13174", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/17", "asm_name": "Rumen uncultured genome RUG13174", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/786/515/GCA_902786515.1_Rumen_uncultured_genome_RUG13174", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-17", "dateModified": "2020-02-17", "datePublished": "2020-02-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lachnospiraceae bacterium" ], "sample_taxid": [ "297314" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.909 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3229449", "Number of Sequences": "108", "Longest Sequences (bp)": "239810", "N50 (bp)": "64314", "Gap Ratio (%)": "0.006007", "GCcontent (%)": "36.6", "Number of CDSs": "2958", "Average Protein Length": "324.4", "Coding Ratio (%)": "89.1", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerostipes faecalis", "strain": "strain=AGMB03513", "accession": "GCA_018982945.1", "taxid": 2738446, "species_taxid": 2738446, "relation_to_type": "type", "validated": true, "ani": 77.9384, "matched_fragments": 54, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyrivibrio crossotus", "strain": "strain=DSM 2876", "accession": "GCA_025148445.1", "taxid": 45851, "species_taxid": 45851, "relation_to_type": "type", "validated": true, "ani": 77.4469, "matched_fragments": 69, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyrivibrio crossotus", "strain": "strain=DSM 2876", "accession": "GCA_000156015.1", "taxid": 45851, "species_taxid": 45851, "relation_to_type": "type", "validated": true, "ani": 77.3202, "matched_fragments": 68, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Konateibacter massiliensis", "strain": "strain=Marseille-P3773", "accession": "GCA_900184995.1", "taxid": 2002841, "species_taxid": 2002841, "relation_to_type": "type", "validated": true, "ani": 77.1562, "matched_fragments": 59, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnospira eligens", "strain": "strain=ATCC 27750", "accession": "GCA_000146185.1", "taxid": 39485, "species_taxid": 39485, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0513, "matched_fragments": 62, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetitomaculum ruminis", "strain": "strain=DSM 5522", "accession": "GCA_900112085.1", "taxid": 2382, "species_taxid": 2382, "relation_to_type": "type", "validated": true, "ani": 76.9077, "matched_fragments": 52, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eubacterium ventriosum", "strain": "strain=ATCC 27560", "accession": "GCA_025150745.1", "taxid": 39496, "species_taxid": 39496, "relation_to_type": "suspected-type", "validated": true, "ani": 76.7351, "matched_fragments": 77, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902786515.1", "gtdb_species": "s__UBA2821 sp902786515", "ani": 100.0, "matched_fragments": 1010, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA2821", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_902786365.1", "gtdb_species": "s__CAG-603 sp902786365", "ani": 80.7259, "matched_fragments": 151, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-603", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902763335.1", "gtdb_species": "s__UBA2821 sp902763335", "ani": 78.9128, "matched_fragments": 196, "total_fragments": 1018, "gtdb_taxonomy": 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