{
    "type": "genome",
    "identifier": "GCA_902786895.1",
    "organism": "Sharpea azabuensis",
    "title": "Sharpea azabuensis",
    "description": "derived from metagenome; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902786895.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6151352",
        "wgs_master": "CADAEL000000000.1",
        "refseq_category": "na",
        "taxid": "322505",
        "species_taxid": "322505",
        "organism_name": "Sharpea azabuensis",
        "infraspecific_name": "",
        "isolate": "RUG13215",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG13215",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "GCF_902786895.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/786/895/GCA_902786895.1_Rumen_uncultured_genome_RUG13215",
        "excluded_from_refseq": "derived from metagenome; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sharpea azabuensis"
        ],
        "sample_taxid": [
            "322505"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.511 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1810664",
        "Number of Sequences": "164",
        "Longest Sequences (bp)": "95695",
        "N50 (bp)": "17599",
        "Gap Ratio (%)": "0.098859",
        "GCcontent (%)": "37.4",
        "Number of CDSs": "1773",
        "Average Protein Length": "286.6",
        "Coding Ratio (%)": "84.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sharpea azabuensis",
                "strain": "strain=DSM 18934",
                "accession": "GCA_000702165.1",
                "taxid": 322505,
                "species_taxid": 322505,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.6572,
                "matched_fragments": 492,
                "total_fragments": 523,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sharpea porci",
                "strain": "strain=CA-Schmier-601-WT-3",
                "accession": "GCA_009695655.1",
                "taxid": 2652286,
                "species_taxid": 2652286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.8806,
                "matched_fragments": 472,
                "total_fragments": 523,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Catenibacterium mitsuokai",
                "strain": "strain=DSM 15897",
                "accession": "GCA_025148785.1",
                "taxid": 100886,
                "species_taxid": 100886,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.9136,
                "matched_fragments": 123,
                "total_fragments": 523,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthia catenaformis",
                "strain": "strain=OT 569",
                "accession": "GCA_000340375.1",
                "taxid": 31973,
                "species_taxid": 31973,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6222,
                "matched_fragments": 78,
                "total_fragments": 523,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthia catenaformis",
                "strain": "strain=DSM 20559",
                "accession": "GCA_000422605.1",
                "taxid": 31973,
                "species_taxid": 31973,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5738,
                "matched_fragments": 78,
                "total_fragments": 523,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longibaculum muris",
                "strain": "strain=DSM 29487",
                "accession": "GCA_004343035.1",
                "taxid": 1796628,
                "species_taxid": 1796628,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0826,
                "matched_fragments": 72,
                "total_fragments": 523,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longibaculum muris",
                "strain": "strain=DSM 29487",
                "accession": "GCA_024622235.1",
                "taxid": 1796628,
                "species_taxid": 1796628,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0726,
                "matched_fragments": 73,
                "total_fragments": 523,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprobacillus cateniformis",
                "strain": "strain=JCM 10604",
                "accession": "GCA_001312445.1",
                "taxid": 100884,
                "species_taxid": 100884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7657,
                "matched_fragments": 58,
                "total_fragments": 523,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprobacillus cateniformis",
                "strain": "strain=RCA1-24",
                "accession": "GCA_009767585.1",
                "taxid": 100884,
                "species_taxid": 100884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7143,
                "matched_fragments": 59,
                "total_fragments": 523,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000702165.1",
                "gtdb_species": "s__Sharpea azabuensis",
                "ani": 98.6572,
                "matched_fragments": 492,
                "total_fragments": 523,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Sharpea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "97.32",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 46,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009695655.1",
                "gtdb_species": "s__Sharpea porci",
                "ani": 88.8806,
                "matched_fragments": 472,
                "total_fragments": 523,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Sharpea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000173795.1",
                "gtdb_species": "s__Catenibacterium mitsuokai",
                "ani": 78.924,
                "matched_fragments": 122,
                "total_fragments": 523,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.03",
                "min_intra_species_ani": "96.27",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900764565.1",
                "gtdb_species": "s__Catenibacterium sp900764565",
                "ani": 78.338,
                "matched_fragments": 103,
                "total_fragments": 523,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900764725.1",
                "gtdb_species": "s__Catenibacterium sp900764725",
                "ani": 78.2552,
                "matched_fragments": 100,
                "total_fragments": 523,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004168205.1",
                "gtdb_species": "s__Catenibacterium sp000437715",
                "ani": 78.2317,
                "matched_fragments": 117,
                "total_fragments": 523,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.65",
                "min_intra_species_ani": "95.64",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCA_900540685.1",
                "gtdb_species": "s__Catenibacterium sp900540685",
                "ani": 78.1559,
                "matched_fragments": 112,
                "total_fragments": 523,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900540665.1",
                "gtdb_species": "s__Catenibacterium sp900540665",
                "ani": 78.1173,
                "matched_fragments": 111,
                "total_fragments": 523,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "99.03",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000340375.1",
                "gtdb_species": "s__Eggerthia catenaformis",
                "ani": 77.6222,
                "matched_fragments": 78,
                "total_fragments": 523,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Eggerthia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.71",
                "min_intra_species_ani": "98.60",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900538465.1",
                "gtdb_species": "s__Longibaculum sp900538465",
                "ani": 77.0932,
                "matched_fragments": 56,
                "total_fragments": 523,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Longibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001244545.1",
                "gtdb_species": "s__Stoquefichus sp001244545",
                "ani": 76.6687,
                "matched_fragments": 67,
                "total_fragments": 523,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Stoquefichus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "98.22",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.301,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.0,
        "genome_size": 2368138.5,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__Erysipelotrichales",
        "f__Coprobacillaceae",
        "g__Sharpea",
        "s__Sharpea azabuensis"
    ],
    "_genome_taxon": [
        "Sharpea",
        "azabuensis",
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__Erysipelotrichales",
        "f__Coprobacillaceae",
        "g__Sharpea",
        "s__Sharpea azabuensis",
        "Bacteria",
        "Bacillota",
        "I",
        "Bacilli",
        "A",
        "Erysipelotrichales",
        "Coprobacillaceae",
        "Sharpea",
        "Sharpea",
        "azabuensis"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}