{
    "type": "genome",
    "identifier": "GCA_902787035.1",
    "organism": "Kandleria vitulina",
    "title": "Kandleria vitulina",
    "description": "derived from metagenome; incomplete metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902787035.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6151362",
        "wgs_master": "CADAEU000000000.1",
        "refseq_category": "na",
        "taxid": "1630",
        "species_taxid": "1630",
        "organism_name": "Kandleria vitulina",
        "infraspecific_name": "",
        "isolate": "RUG13225",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG13225",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "GCF_902787035.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/787/035/GCA_902787035.1_Rumen_uncultured_genome_RUG13225",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kandleria vitulina"
        ],
        "sample_taxid": [
            "1630"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.506 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1800760",
        "Number of Sequences": "80",
        "Longest Sequences (bp)": "104718",
        "N50 (bp)": "35755",
        "Gap Ratio (%)": "0.014383",
        "GCcontent (%)": "35.3",
        "Number of CDSs": "1771",
        "Average Protein Length": "301.9",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Kandleria vitulina",
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                "species_taxid": 1630,
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                "status": "conclusive"
            },
            {
                "organism_name": "Kandleria vitulina",
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                "relation_to_type": "type",
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                "matched_fragments": 526,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Intestinibaculum porci",
                "strain": "strain=SG0102",
                "accession": "GCA_003925875.1",
                "taxid": 2487118,
                "species_taxid": 2487118,
                "relation_to_type": "type",
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                "ani": 78.8077,
                "matched_fragments": 132,
                "total_fragments": 561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Catenibacterium mitsuokai",
                "strain": "strain=DSM 15897",
                "accession": "GCA_025148785.1",
                "taxid": 100886,
                "species_taxid": 100886,
                "relation_to_type": "suspected-type",
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                "ani": 77.9808,
                "matched_fragments": 141,
                "total_fragments": 561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sharpea porci",
                "strain": "strain=CA-Schmier-601-WT-3",
                "accession": "GCA_009695655.1",
                "taxid": 2652286,
                "species_taxid": 2652286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.946,
                "matched_fragments": 136,
                "total_fragments": 561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sharpea azabuensis",
                "strain": "strain=DSM 18934",
                "accession": "GCA_000702165.1",
                "taxid": 322505,
                "species_taxid": 322505,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8665,
                "matched_fragments": 138,
                "total_fragments": 561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longibaculum muris",
                "strain": "strain=DSM 29487",
                "accession": "GCA_004343035.1",
                "taxid": 1796628,
                "species_taxid": 1796628,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.803,
                "matched_fragments": 92,
                "total_fragments": 561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprobacillus cateniformis",
                "strain": "strain=RCA1-24",
                "accession": "GCA_009767585.1",
                "taxid": 100884,
                "species_taxid": 100884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.571,
                "matched_fragments": 75,
                "total_fragments": 561,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000702065.1",
                "gtdb_species": "s__Kandleria vitulina",
                "ani": 99.2297,
                "matched_fragments": 526,
                "total_fragments": 561,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Kandleria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.93",
                "min_intra_species_ani": "98.27",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 20,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003925875.1",
                "gtdb_species": "s__Intestinibaculum porci",
                "ani": 78.7745,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Intestinibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.71",
                "min_intra_species_ani": "97.29",
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                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 24,
                "status": "-"
            },
            {
                "accession": "GCF_004168205.1",
                "gtdb_species": "s__Catenibacterium sp000437715",
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                "matched_fragments": 130,
                "total_fragments": 561,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.65",
                "min_intra_species_ani": "95.64",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCA_900540685.1",
                "gtdb_species": "s__Catenibacterium sp900540685",
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                "matched_fragments": 132,
                "total_fragments": 561,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
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                "mean_intra_species_ani": "99.87",
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            {
                "accession": "GCA_900764725.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
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            },
            {
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        ]
    },
    "_bac2feature": {
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        "rRNA16S_genes": null,
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    },
    "_gtdb_taxon": [
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        "f__Coprobacillaceae",
        "g__Kandleria",
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    ],
    "_genome_taxon": [
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        "c__Bacilli_A",
        "o__Erysipelotrichales",
        "f__Coprobacillaceae",
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        "Bacteria",
        "Bacillota",
        "I",
        "Bacilli",
        "A",
        "Erysipelotrichales",
        "Coprobacillaceae",
        "Kandleria",
        "Kandleria",
        "vitulina"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}