{
    "type": "genome",
    "identifier": "GCA_902787095.1",
    "organism": "uncultured Bacteroidia bacterium",
    "title": "uncultured Bacteroidia bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902787095.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6151375",
        "wgs_master": "CADAFC000000000.1",
        "refseq_category": "na",
        "taxid": "1129257",
        "species_taxid": "1129257",
        "organism_name": "uncultured Bacteroidia bacterium",
        "infraspecific_name": "",
        "isolate": "RUG13238",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG13238",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/787/095/GCA_902787095.1_Rumen_uncultured_genome_RUG13238",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Bacteroidia bacterium"
        ],
        "sample_taxid": [
            "1129257"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.625 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2181047",
        "Number of Sequences": "179",
        "Longest Sequences (bp)": "80058",
        "N50 (bp)": "19553",
        "Gap Ratio (%)": "0.006006",
        "GCcontent (%)": "46.5",
        "Number of CDSs": "1698",
        "Average Protein Length": "349.7",
        "Coding Ratio (%)": "81.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902787095.1",
                "gtdb_species": "s__Limimorpha sp902787095",
                "ani": 99.9999,
                "matched_fragments": 620,
                "total_fragments": 631,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__F082;g__Limimorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.76",
                "min_intra_species_ani": "97.57",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017645275.1",
                "gtdb_species": "s__Limimorpha sp017645275",
                "ani": 89.2745,
                "matched_fragments": 423,
                "total_fragments": 631,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__F082;g__Limimorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.51",
                "min_intra_species_ani": "96.51",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900315175.1",
                "gtdb_species": "s__Limimorpha sp900315175",
                "ani": 85.4372,
                "matched_fragments": 463,
                "total_fragments": 631,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__F082;g__Limimorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.94",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_902774295.1",
                "gtdb_species": "s__Limimorpha sp902774295",
                "ani": 85.0357,
                "matched_fragments": 468,
                "total_fragments": 631,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__F082;g__Limimorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.98",
                "min_intra_species_ani": "96.75",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_905234275.1",
                "gtdb_species": "s__Limimorpha sp905234275",
                "ani": 83.792,
                "matched_fragments": 442,
                "total_fragments": 631,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__F082;g__Limimorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.78",
                "min_intra_species_ani": "96.78",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002311655.1",
                "gtdb_species": "s__Limimorpha sp002311655",
                "ani": 83.6849,
                "matched_fragments": 409,
                "total_fragments": 631,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__F082;g__Limimorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905236635.1",
                "gtdb_species": "s__Limimorpha sp905236635",
                "ani": 83.2228,
                "matched_fragments": 395,
                "total_fragments": 631,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__F082;g__Limimorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.38",
                "min_intra_species_ani": "97.38",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017649945.1",
                "gtdb_species": "s__Limimorpha sp017649945",
                "ani": 82.7671,
                "matched_fragments": 342,
                "total_fragments": 631,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__F082;g__Limimorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.04",
                "min_intra_species_ani": "97.49",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017427985.1",
                "gtdb_species": "s__Limimorpha sp017427985",
                "ani": 82.4038,
                "matched_fragments": 412,
                "total_fragments": 631,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__F082;g__Limimorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017553625.1",
                "gtdb_species": "s__Limimorpha sp017553625",
                "ani": 81.9674,
                "matched_fragments": 398,
                "total_fragments": 631,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__F082;g__Limimorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017616675.1",
                "gtdb_species": "s__Limimorpha sp017616675",
                "ani": 81.4486,
                "matched_fragments": 235,
                "total_fragments": 631,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__F082;g__Limimorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900542475.1",
                "gtdb_species": "s__Limimorpha sp900542475",
                "ani": 80.3113,
                "matched_fragments": 308,
                "total_fragments": 631,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__F082;g__Limimorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__F082",
        "g__Limimorpha",
        "s__Limimorpha sp902787095"
    ],
    "_genome_taxon": [
        "uncultured",
        "Bacteroidia",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__F082",
        "g__Limimorpha",
        "s__Limimorpha sp902787095",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "F082",
        "Limimorpha",
        "Limimorpha",
        "sp902787095"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}