{
    "type": "genome",
    "identifier": "GCA_902791345.1",
    "organism": "uncultured Dialister sp.",
    "title": "uncultured Dialister sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902791345.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6151799",
        "wgs_master": "CADAVC000000000.1",
        "refseq_category": "na",
        "taxid": "278064",
        "species_taxid": "278064",
        "organism_name": "uncultured Dialister sp.",
        "infraspecific_name": "",
        "isolate": "RUG13662",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG13662",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/791/345/GCA_902791345.1_Rumen_uncultured_genome_RUG13662",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Dialister sp."
        ],
        "sample_taxid": [
            "278064"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.657 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2323311",
        "Number of Sequences": "74",
        "Longest Sequences (bp)": "209064",
        "N50 (bp)": "52775",
        "Gap Ratio (%)": "0.002669",
        "GCcontent (%)": "47.8",
        "Number of CDSs": "2035",
        "Average Protein Length": "304.7",
        "Coding Ratio (%)": "80.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Dialister succinatiphilus",
                "strain": "strain=YIT 11850",
                "accession": "GCA_000242435.1",
                "taxid": 487173,
                "species_taxid": 487173,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7312,
                "matched_fragments": 301,
                "total_fragments": 736,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dialister invisus",
                "strain": "strain=DSM 15470",
                "accession": "GCA_000160055.1",
                "taxid": 218538,
                "species_taxid": 218538,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0116,
                "matched_fragments": 85,
                "total_fragments": 736,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allisonella histaminiformans",
                "strain": "strain=DSM 15230",
                "accession": "GCA_900103425.1",
                "taxid": 209880,
                "species_taxid": 209880,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7309,
                "matched_fragments": 61,
                "total_fragments": 736,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900314595.1",
                "gtdb_species": "s__Dialister sp900314595",
                "ani": 99.9901,
                "matched_fragments": 701,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.02",
                "min_intra_species_ani": "98.53",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002471975.1",
                "gtdb_species": "s__Dialister sp002471975",
                "ani": 87.7022,
                "matched_fragments": 456,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.86",
                "min_intra_species_ani": "99.84",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000242435.1",
                "gtdb_species": "s__Dialister succinatiphilus",
                "ani": 79.7312,
                "matched_fragments": 301,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.14",
                "min_intra_species_ani": "96.38",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_002320515.1",
                "gtdb_species": "s__Dialister sp002320515",
                "ani": 79.3697,
                "matched_fragments": 259,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.66",
                "min_intra_species_ani": "97.44",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_900538805.1",
                "gtdb_species": "s__Dialister sp900538805",
                "ani": 79.3612,
                "matched_fragments": 279,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.71",
                "min_intra_species_ani": "96.58",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900765565.1",
                "gtdb_species": "s__Dialister sp900765565",
                "ani": 79.1303,
                "matched_fragments": 231,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900541605.1",
                "gtdb_species": "s__Dialister sp900541605",
                "ani": 79.0839,
                "matched_fragments": 242,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.13",
                "min_intra_species_ani": "96.92",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900759415.1",
                "gtdb_species": "s__Dialister sp900759415",
                "ani": 78.6194,
                "matched_fragments": 158,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.64",
                "min_intra_species_ani": "97.64",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002439665.1",
                "gtdb_species": "s__Dialister sp002439665",
                "ani": 77.9705,
                "matched_fragments": 103,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900545785.1",
                "gtdb_species": "s__Dialister sp900545785",
                "ani": 77.5595,
                "matched_fragments": 71,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.534,
        "cell_length": -0.368,
        "doubling_h": null,
        "growth_tmp": 36.75,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.0,
        "genome_size": 1738438.625,
        "gc_content": 40.35,
        "coding_genes": 1169.0,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 53.0,
        "gram_stain": 0.5,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.75,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.25,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Veillonellales",
        "f__Dialisteraceae",
        "g__Dialister",
        "s__Dialister sp900314595"
    ],
    "_genome_taxon": [
        "uncultured",
        "Dialister",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Veillonellales",
        "f__Dialisteraceae",
        "g__Dialister",
        "s__Dialister sp900314595",
        "Bacteria",
        "Bacillota",
        "C",
        "Negativicutes",
        "Veillonellales",
        "Dialisteraceae",
        "Dialister",
        "Dialister",
        "sp900314595"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}