{
    "type": "genome",
    "identifier": "GCA_902792185.1",
    "organism": "uncultured Lachnospiraceae bacterium",
    "title": "uncultured Lachnospiraceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902792185.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6151886",
        "wgs_master": "CADAYS000000000.1",
        "refseq_category": "na",
        "taxid": "297314",
        "species_taxid": "297314",
        "organism_name": "uncultured Lachnospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "RUG13749",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/17",
        "asm_name": "Rumen uncultured genome RUG13749",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/792/185/GCA_902792185.1_Rumen_uncultured_genome_RUG13749",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-17",
    "dateModified": "2020-02-17",
    "datePublished": "2020-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Lachnospiraceae bacterium"
        ],
        "sample_taxid": [
            "297314"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.765 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 67.71,
        "contamination": 23.96,
        "strain_heterogeneity": 77.78,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2690347",
        "Number of Sequences": "179",
        "Longest Sequences (bp)": "79436",
        "N50 (bp)": "27966",
        "Gap Ratio (%)": "0.015463",
        "GCcontent (%)": "41.8",
        "Number of CDSs": "2256",
        "Average Protein Length": "340.6",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Eubacterium ruminantium",
                "strain": "strain=ATCC 17233",
                "accession": "GCA_900167085.1",
                "taxid": 42322,
                "species_taxid": 42322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6403,
                "matched_fragments": 98,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprococcus eutactus",
                "strain": "strain=ATCC 27759",
                "accession": "GCA_025149915.1",
                "taxid": 33043,
                "species_taxid": 33043,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.4349,
                "matched_fragments": 51,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprococcus eutactus",
                "strain": "strain=ATCC 27759",
                "accession": "GCA_000154425.1",
                "taxid": 33043,
                "species_taxid": 33043,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.3605,
                "matched_fragments": 53,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 67.71,
            "contamination": 23.96,
            "strain_heterogeneity": 77.78
        },
        "gtdb_result": [
            {
                "accession": "GCA_900316715.1",
                "gtdb_species": "s__Eubacterium_Q sp900316715",
                "ani": 98.7638,
                "matched_fragments": 667,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.73",
                "min_intra_species_ani": "96.50",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 14,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002350525.1",
                "gtdb_species": "s__Eubacterium_Q sp002350525",
                "ani": 84.2809,
                "matched_fragments": 569,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "97.74",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_902780985.1",
                "gtdb_species": "s__Eubacterium_Q sp902780985",
                "ani": 83.8526,
                "matched_fragments": 422,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017634555.1",
                "gtdb_species": "s__Eubacterium_Q sp017634555",
                "ani": 80.3328,
                "matched_fragments": 297,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900110635.1",
                "gtdb_species": "s__Eubacterium_Q sp900110635",
                "ani": 78.582,
                "matched_fragments": 143,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000687975.1",
                "gtdb_species": "s__Eubacterium_Q sp000687975",
                "ani": 78.5019,
                "matched_fragments": 178,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900167085.1",
                "gtdb_species": "s__Eubacterium_Q ruminantium",
                "ani": 77.6403,
                "matched_fragments": 98,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "98.63",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_017430325.1",
                "gtdb_species": "s__Eubacterium_Q sp017430325",
                "ani": 77.6226,
                "matched_fragments": 104,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.28",
                "min_intra_species_ani": "98.28",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902774725.1",
                "gtdb_species": "s__Eubacterium_Q sp902774725",
                "ani": 77.5313,
                "matched_fragments": 106,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.31",
                "min_intra_species_ani": "95.93",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003520205.1",
                "gtdb_species": "s__Eubacterium_Q sp003520205",
                "ani": 77.0861,
                "matched_fragments": 84,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.98",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002368685.1",
                "gtdb_species": "s__Eubacterium_Q sp002368685",
                "ani": 76.2383,
                "matched_fragments": 65,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.10",
                "min_intra_species_ani": "96.10",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.239,
        "cell_length": 0.277,
        "doubling_h": 0.394,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.16,
        "optimum_ph": 6.363,
        "genome_size": 3641163.5,
        "gc_content": 42.852,
        "coding_genes": 3283.347,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 63.727,
        "gram_stain": 0.885,
        "sporulation": 0.414,
        "motility": 0.448,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.988,
        "aerobic_respiration": 0.011,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.8,
        "coccus_cell_shape": 0.133,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.033,
        "vibrio_cell_shape": 0.033,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Eubacterium_Q",
        "s__Eubacterium_Q sp900316715"
    ],
    "_genome_taxon": [
        "uncultured",
        "Lachnospiraceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Eubacterium_Q",
        "s__Eubacterium_Q sp900316715",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Eubacterium",
        "Q",
        "Eubacterium",
        "Q",
        "sp900316715"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}