{
    "type": "genome",
    "identifier": "GCA_902792865.1",
    "organism": "uncultured Elusimicrobium sp.",
    "title": "uncultured Elusimicrobium sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902792865.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6151955",
        "wgs_master": "CADBBJ000000000.1",
        "refseq_category": "na",
        "taxid": "575659",
        "species_taxid": "575659",
        "organism_name": "uncultured Elusimicrobium sp.",
        "infraspecific_name": "",
        "isolate": "RUG13817",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG13817",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/792/865/GCA_902792865.1_Rumen_uncultured_genome_RUG13817",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Elusimicrobium sp."
        ],
        "sample_taxid": [
            "575659"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.577 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2124432",
        "Number of Sequences": "101",
        "Longest Sequences (bp)": "91143",
        "N50 (bp)": "37673",
        "Gap Ratio (%)": "0.001600",
        "GCcontent (%)": "28.5",
        "Number of CDSs": "1766",
        "Average Protein Length": "321.3",
        "Coding Ratio (%)": "80.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900321055.1",
                "gtdb_species": "s__RUG658 sp900321055",
                "ani": 98.9533,
                "matched_fragments": 300,
                "total_fragments": 656,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "99.63",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902761395.1",
                "gtdb_species": "s__RUG658 sp902761395",
                "ani": 80.3276,
                "matched_fragments": 190,
                "total_fragments": 656,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017651625.1",
                "gtdb_species": "s__RUG658 sp017651625",
                "ani": 80.3157,
                "matched_fragments": 264,
                "total_fragments": 656,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002448285.1",
                "gtdb_species": "s__RUG658 sp002448285",
                "ani": 80.2363,
                "matched_fragments": 303,
                "total_fragments": 656,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "99.10",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_017529005.1",
                "gtdb_species": "s__RUG658 sp017529005",
                "ani": 80.042,
                "matched_fragments": 250,
                "total_fragments": 656,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017525905.1",
                "gtdb_species": "s__RUG658 sp017525905",
                "ani": 80.0315,
                "matched_fragments": 282,
                "total_fragments": 656,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.07",
                "min_intra_species_ani": "97.07",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017528425.1",
                "gtdb_species": "s__RUG658 sp017528425",
                "ani": 79.8828,
                "matched_fragments": 283,
                "total_fragments": 656,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017413305.1",
                "gtdb_species": "s__RUG658 sp017413305",
                "ani": 78.5519,
                "matched_fragments": 129,
                "total_fragments": 656,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905236115.1",
                "gtdb_species": "s__RUG658 sp905236115",
                "ani": 77.2109,
                "matched_fragments": 104,
                "total_fragments": 656,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 26.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.5,
        "genome_size": 1643561.6,
        "gc_content": 40.0,
        "coding_genes": 1525.333,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 45.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Elusimicrobiota",
        "c__Endomicrobiia",
        "o__Endomicrobiales",
        "f__Endomicrobiaceae",
        "g__RUG658",
        "s__RUG658 sp900321055"
    ],
    "_genome_taxon": [
        "uncultured",
        "Elusimicrobium",
        "sp.",
        "d__Bacteria",
        "p__Elusimicrobiota",
        "c__Endomicrobiia",
        "o__Endomicrobiales",
        "f__Endomicrobiaceae",
        "g__RUG658",
        "s__RUG658 sp900321055",
        "Bacteria",
        "Elusimicrobiota",
        "Endomicrobiia",
        "Endomicrobiales",
        "Endomicrobiaceae",
        "RUG658",
        "RUG658",
        "sp900321055"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}