{ "type": "genome", "identifier": "GCA_902793165.1", "organism": "uncultured Lachnospiraceae bacterium", "title": "uncultured Lachnospiraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902793165.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6151982", "wgs_master": "CADBCP000000000.1", "refseq_category": "na", "taxid": "297314", "species_taxid": "297314", "organism_name": "uncultured Lachnospiraceae bacterium", "infraspecific_name": "", "isolate": "RUG13844", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/15", "asm_name": "Rumen uncultured genome RUG13844", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/793/165/GCA_902793165.1_Rumen_uncultured_genome_RUG13844", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-15", "dateModified": "2020-02-15", "datePublished": "2020-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lachnospiraceae bacterium" ], "sample_taxid": [ "297314" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.599 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2111659", "Number of Sequences": "187", "Longest Sequences (bp)": "104579", "N50 (bp)": "19786", "Gap Ratio (%)": "0.038974", "GCcontent (%)": "55.7", "Number of CDSs": "1780", "Average Protein Length": "326.1", "Coding Ratio (%)": "82.5", "Number of rRNAs": "1", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "[Clostridium] aminophilum", "strain": "strain=DSM 10710", "accession": "GCA_000711825.1", "taxid": 1526, "species_taxid": 1526, "relation_to_type": "type", "validated": true, "ani": 77.9, "matched_fragments": 105, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] aminophilum", "strain": "strain=F", "accession": "GCA_900112885.1", "taxid": 1526, "species_taxid": 1526, "relation_to_type": "type", "validated": true, "ani": 77.8776, "matched_fragments": 105, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium vitabionis", "strain": "strain=YH-T4B42", "accession": "GCA_015351765.1", "taxid": 2784388, "species_taxid": 2784388, "relation_to_type": "type", "validated": true, "ani": 77.7716, "matched_fragments": 139, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster asparagiformis", "strain": "strain=DSM 15981", "accession": "GCA_025149125.1", "taxid": 333367, "species_taxid": 333367, "relation_to_type": "type", "validated": true, "ani": 76.881, "matched_fragments": 88, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002959675.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 76.7013, "matched_fragments": 65, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster asparagiformis", "strain": "strain=DSM 15981", "accession": "GCA_000158075.1", "taxid": 333367, "species_taxid": 333367, "relation_to_type": "type", "validated": true, "ani": 76.6682, "matched_fragments": 85, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002234575.2", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 76.6109, "matched_fragments": 66, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_000154365.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 76.5424, "matched_fragments": 63, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=ATCC 25537", "accession": "GCA_900113155.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "type", "validated": true, "ani": 76.5245, "matched_fragments": 62, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=NCTC11224", "accession": "GCA_900447015.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 76.514, "matched_fragments": 66, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=FDAARGOS_1529", "accession": "GCA_020297485.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 76.509, "matched_fragments": 65, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003445895.1", "gtdb_species": "s__Clostridium_R sp003445895", "ani": 97.6527, "matched_fragments": 350, "total_fragments": 613, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_R", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.01", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.69", "num_clustered_genomes": 11, "status": "conclusive" }, { "accession": "GCA_017634415.1", "gtdb_species": "s__Clostridium_R sp017634415", "ani": 84.1215, "matched_fragments": 279, "total_fragments": 613, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_R", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900321915.1", "gtdb_species": "s__Clostridium_R sp900321915", "ani": 81.5419, "matched_fragments": 281, "total_fragments": 613, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_R", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000711825.1", "gtdb_species": "s__Clostridium_R aminophilum", "ani": 77.9315, "matched_fragments": 104, "total_fragments": 613, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_R", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": 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