{
    "type": "genome",
    "identifier": "GCA_902793375.1",
    "organism": "uncultured Erysipelotrichaceae bacterium",
    "title": "uncultured Erysipelotrichaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902793375.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6152006",
        "wgs_master": "CADBDE000000000.1",
        "refseq_category": "na",
        "taxid": "331630",
        "species_taxid": "331630",
        "organism_name": "uncultured Erysipelotrichaceae bacterium",
        "infraspecific_name": "",
        "isolate": "RUG13868",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/14",
        "asm_name": "Rumen uncultured genome RUG13868",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/793/375/GCA_902793375.1_Rumen_uncultured_genome_RUG13868",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-14",
    "dateModified": "2020-02-14",
    "datePublished": "2020-02-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Erysipelotrichaceae bacterium"
        ],
        "sample_taxid": [
            "331630"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.426 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1588398",
        "Number of Sequences": "31",
        "Longest Sequences (bp)": "270888",
        "N50 (bp)": "74902",
        "Gap Ratio (%)": "0.011206",
        "GCcontent (%)": "25.9",
        "Number of CDSs": "1575",
        "Average Protein Length": "305.2",
        "Coding Ratio (%)": "90.8",
        "Number of rRNAs": "1",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Clostridium puniceum",
                "strain": "strain=DSM 2619",
                "accession": "GCA_002006345.1",
                "taxid": 29367,
                "species_taxid": 29367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.873,
                "matched_fragments": 62,
                "total_fragments": 514,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902793375.1",
                "gtdb_species": "s__RUG13868 sp902793375",
                "ani": 100.0,
                "matched_fragments": 513,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RUG13868",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017525035.1",
                "gtdb_species": "s__RUG13868 sp017525035",
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                "matched_fragments": 183,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RUG13868",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017477845.1",
                "gtdb_species": "s__RUG13868 sp017477845",
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                "matched_fragments": 202,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RUG13868",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902767365.1",
                "gtdb_species": "s__RUG13868 sp902767365",
                "ani": 79.0606,
                "matched_fragments": 221,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RUG13868",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017625395.1",
                "gtdb_species": "s__RUG13868 sp017625395",
                "ani": 78.0715,
                "matched_fragments": 143,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RUG13868",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017541325.1",
                "gtdb_species": "s__RUG11788 sp017541325",
                "ani": 77.6278,
                "matched_fragments": 106,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RUG11788",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000432595.1",
                "gtdb_species": "s__CAG-710 sp000432595",
                "ani": 77.5437,
                "matched_fragments": 74,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-710",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.45",
                "min_intra_species_ani": "98.40",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900547465.1",
                "gtdb_species": "s__UMGS995 sp900547465",
                "ani": 76.4228,
                "matched_fragments": 62,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UMGS995",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "97.90",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_000434175.1",
                "gtdb_species": "s__CAG-611 sp000434175",
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                "matched_fragments": 61,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-611",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.26",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900550145.1",
                "gtdb_species": "s__CAG-1193 sp900550145",
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                "matched_fragments": 50,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-1193",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "98.48",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017428495.1",
                "gtdb_species": "s__CAG-1193 sp017428495",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-1193",
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                "mean_intra_species_ani": "98.47",
                "min_intra_species_ani": "98.35",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017461465.1",
                "gtdb_species": "s__RGIG4266 sp017461465",
                "ani": 75.8558,
                "matched_fragments": 50,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RGIG4266",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017459425.1",
                "gtdb_species": "s__RGIG4382 sp017459425",
                "ani": 75.7897,
                "matched_fragments": 61,
                "total_fragments": 514,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RGIG4382",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.333,
        "cell_length": 0.183,
        "doubling_h": null,
        "growth_tmp": 36.057,
        "optimum_tmp": 36.214,
        "optimum_ph": 7.27,
        "genome_size": 2715599.544,
        "gc_content": 38.082,
        "coding_genes": 2417.7,
        "rRNA16S_genes": 7.3,
        "tRNA_genes": 50.0,
        "gram_stain": 1.0,
        "sporulation": 0.235,
        "motility": 0.3,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.869,
        "aerobic_respiration": 0.13,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.933,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.066
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__RF39",
        "f__UBA660",
        "g__RUG13868",
        "s__RUG13868 sp902793375"
    ],
    "_genome_taxon": [
        "uncultured",
        "Erysipelotrichaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__RF39",
        "f__UBA660",
        "g__RUG13868",
        "s__RUG13868 sp902793375",
        "Bacteria",
        "Bacillota",
        "I",
        "Bacilli",
        "A",
        "RF39",
        "UBA660",
        "RUG13868",
        "RUG13868",
        "sp902793375"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}