{ "type": "genome", "identifier": "GCA_902793655.1", "organism": "uncultured Olsenella sp.", "title": "uncultured Olsenella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902793655.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6152031", "wgs_master": "CADBEO000000000.1", "refseq_category": "na", "taxid": "190764", "species_taxid": "190764", "organism_name": "uncultured Olsenella sp.", "infraspecific_name": "", "isolate": "RUG13893", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/15", "asm_name": "Rumen uncultured genome RUG13893", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/793/655/GCA_902793655.1_Rumen_uncultured_genome_RUG13893", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-15", "dateModified": "2020-02-15", "datePublished": "2020-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Olsenella sp." ], "sample_taxid": [ "190764" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.637 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.97, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2258816", "Number of Sequences": "206", "Longest Sequences (bp)": "97928", "N50 (bp)": "18070", "Gap Ratio (%)": "0.015938", "GCcontent (%)": "62.7", "Number of CDSs": "1926", "Average Protein Length": "307.5", "Coding Ratio (%)": "78.7", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermophilibacter mediterraneus", "strain": "strain=Marseille-P3256", "accession": "GCA_900119385.1", "taxid": 1871031, "species_taxid": 1871031, "relation_to_type": "type", "validated": true, "ani": 79.3213, "matched_fragments": 219, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter provencensis", "strain": "strain=Marseille-P2912", "accession": "GCA_900128445.1", "taxid": 1852386, "species_taxid": 1852386, "relation_to_type": "type", "validated": true, "ani": 79.2855, "matched_fragments": 236, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella phocaeensis", "strain": "strain=Marseille-P2936", "accession": "GCA_900120385.1", "taxid": 1852385, "species_taxid": 1852385, "relation_to_type": "type", "validated": true, "ani": 79.0267, "matched_fragments": 185, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella intestinalis", "strain": "strain=KCTC 25379", "accession": "GCA_023276655.1", "taxid": 2930083, "species_taxid": 2930083, "relation_to_type": "type", "validated": true, "ani": 78.8501, "matched_fragments": 188, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella urininfantis", "strain": "strain=Marseille-P3197", "accession": "GCA_900155635.1", "taxid": 1871033, "species_taxid": 1871033, "relation_to_type": "type", "validated": true, "ani": 78.7931, "matched_fragments": 154, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parolsenella massiliensis", "strain": "strain=Marseille-P3237", "accession": "GCA_900143685.1", "taxid": 1871022, "species_taxid": 1871022, "relation_to_type": "type", "validated": true, "ani": 78.726, "matched_fragments": 157, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter immobilis", "strain": "strain=LZLJ-2", "accession": "GCA_015277515.1", "taxid": 2779519, "species_taxid": 2779519, "relation_to_type": "type", "validated": true, "ani": 78.5488, "matched_fragments": 228, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella massiliensis", "strain": "strain=SIT9", "accession": "GCA_001457795.1", "taxid": 1622075, "species_taxid": 1622075, "relation_to_type": "type", "validated": true, "ani": 78.4197, "matched_fragments": 165, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parolsenella catena", "strain": "strain=JCM 31932", "accession": "GCA_003966955.1", "taxid": 2003188, "species_taxid": 2003188, "relation_to_type": "type", "validated": true, "ani": 78.2998, "matched_fragments": 153, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella phocaeensis", "strain": "strain=Marseille-P3245", "accession": "GCA_900119895.1", "taxid": 1871016, "species_taxid": 1871016, "relation_to_type": "type", "validated": true, "ani": 77.4199, "matched_fragments": 92, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella bouchesdurhonensis", "strain": "strain=Marseille-P3296", "accession": "GCA_900155365.1", "taxid": 1907654, "species_taxid": 1907654, "relation_to_type": "type", "validated": true, "ani": 77.3645, "matched_fragments": 61, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.97, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902773995.1", "gtdb_species": "s__Tractidigestivibacter sp902773995", "ani": 97.561, "matched_fragments": 536, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "97.55", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_900770865.1", "gtdb_species": "s__Tractidigestivibacter sp900770865", "ani": 93.8823, "matched_fragments": 361, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000752675.2", "gtdb_species": "s__Tractidigestivibacter sp000752675", "ani": 92.6266, "matched_fragments": 511, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCA_900768455.1", "gtdb_species": "s__Tractidigestivibacter sp900768455", "ani": 91.2015, "matched_fragments": 445, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900119625.1", "gtdb_species": "s__Tractidigestivibacter sp900119625", "ani": 91.1865, "matched_fragments": 496, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.91", "min_intra_species_ani": "96.91", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001494635.1", "gtdb_species": "s__Tractidigestivibacter scatoligenes", "ani": 90.5208, "matched_fragments": 504, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902834555.1", "gtdb_species": "s__Tractidigestivibacter sp902834555", "ani": 90.0887, "matched_fragments": 489, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_004557505.1", "gtdb_species": "s__Tractidigestivibacter sp004557505", "ani": 85.6457, "matched_fragments": 435, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": -0.097, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 6.5, "genome_size": 2356193.333, "gc_content": 64.7, "coding_genes": 1727.667, "rRNA16S_genes": 1.0, "tRNA_genes": 49.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Atopobiaceae", "g__Tractidigestivibacter", "s__Tractidigestivibacter sp902773995" ], "_genome_taxon": [ "uncultured", "Olsenella", "sp.", "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Atopobiaceae", "g__Tractidigestivibacter", "s__Tractidigestivibacter sp902773995", "Bacteria", "Actinomycetota", "Coriobacteriia", "Coriobacteriales", "Atopobiaceae", "Tractidigestivibacter", "Tractidigestivibacter", "sp902773995" ], "_meo": [ { "id": "MEO_0000046", "label": "rumen" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }