{ "type": "genome", "identifier": "GCA_902795845.1", "organism": "uncultured Erysipelotrichaceae bacterium", "title": "uncultured Erysipelotrichaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902795845.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6152259", "wgs_master": "CADBMU000000000.1", "refseq_category": "na", "taxid": "331630", "species_taxid": "331630", "organism_name": "uncultured Erysipelotrichaceae bacterium", "infraspecific_name": "", "isolate": "RUG14121", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/14", "asm_name": "Rumen uncultured genome RUG14121", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/795/845/GCA_902795845.1_Rumen_uncultured_genome_RUG14121", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-14", "dateModified": "2020-02-14", "datePublished": "2020-02-14", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Erysipelotrichaceae bacterium" ], "sample_taxid": [ "331630" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.227 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "843998", "Number of Sequences": "112", "Longest Sequences (bp)": "30355", "N50 (bp)": "9983", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "24.6", "Number of CDSs": "810", "Average Protein Length": "286.7", "Coding Ratio (%)": "82.5", "Number of rRNAs": "1", "Number of tRNAs": "19", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 70.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902795845.1", "gtdb_species": "s__RUG14121 sp902795845", "ani": 100.0, "matched_fragments": 218, "total_fragments": 220, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RUG14121", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_016297695.1", "gtdb_species": "s__RUG14121 sp016297695", "ani": 83.0612, "matched_fragments": 162, "total_fragments": 220, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RUG14121", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015059485.1", "gtdb_species": "s__RUG14121 sp015059485", "ani": 79.0167, "matched_fragments": 115, "total_fragments": 220, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RUG14121", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017484065.1", "gtdb_species": "s__RGIG4822 sp017484065", "ani": 76.749, "matched_fragments": 55, "total_fragments": 220, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RGIG4822", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900757295.1", "gtdb_species": "s__HGM10766 sp900757295", "ani": 76.6838, "matched_fragments": 51, "total_fragments": 220, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__HGM10766", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900760845.1", "gtdb_species": "s__CAG-582 sp900760845", "ani": 76.5435, "matched_fragments": 57, "total_fragments": 220, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-582", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910587775.1", "gtdb_species": "s__MGBC162267 sp910587775", "ani": 76.3252, "matched_fragments": 50, "total_fragments": 220, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__MGBC162267", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000437355.1", "gtdb_species": "s__Onthocola_B sp000437355", "ani": 76.1568, "matched_fragments": 50, "total_fragments": 220, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Onthocola_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "98.06", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_910588025.1", "gtdb_species": "s__MGBC162267 sp910588025", "ani": 75.997, "matched_fragments": 50, "total_fragments": 220, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__MGBC162267", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017411405.1", "gtdb_species": "s__UMGS1124 sp017411405", "ani": 75.9843, "matched_fragments": 56, "total_fragments": 220, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UMGS1124", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.333, "cell_length": 0.183, "doubling_h": null, "growth_tmp": 36.057, "optimum_tmp": 36.214, "optimum_ph": 7.27, "genome_size": 2715599.544, "gc_content": 38.082, "coding_genes": 2417.7, "rRNA16S_genes": 7.3, "tRNA_genes": 50.0, "gram_stain": 1.0, "sporulation": 0.235, "motility": 0.3, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.869, "aerobic_respiration": 0.13, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.933, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.066 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__RF39", "f__UBA660", "g__RUG14121", "s__RUG14121 sp902795845" ], "_genome_taxon": [ "uncultured", "Erysipelotrichaceae", "bacterium", "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__RF39", "f__UBA660", "g__RUG14121", "s__RUG14121 sp902795845", "Bacteria", "Bacillota", "I", "Bacilli", "A", "RF39", "UBA660", "RUG14121", "RUG14121", "sp902795845" ], "_meo": [ { "id": "MEO_0000046", "label": "rumen" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }