{ "type": "genome", "identifier": "GCA_902800095.1", "organism": "Fibrobacter succinogenes", "title": "Fibrobacter succinogenes", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902800095.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6152679", "wgs_master": "CADCDF000000000.1", "refseq_category": "na", "taxid": "833", "species_taxid": "833", "organism_name": "Fibrobacter succinogenes", "infraspecific_name": "", "isolate": "RUG14540", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/17", "asm_name": "Rumen uncultured genome RUG14540", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "GCF_902800095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/800/095/GCA_902800095.1_Rumen_uncultured_genome_RUG14540", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-17", "dateModified": "2020-02-17", "datePublished": "2020-02-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Fibrobacter succinogenes" ], "sample_taxid": [ "833" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.750 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2622831", "Number of Sequences": "97", "Longest Sequences (bp)": "147154", "N50 (bp)": "46929", "Gap Ratio (%)": "0.023295", "GCcontent (%)": "54.3", "Number of CDSs": "2103", "Average Protein Length": "367.3", "Coding Ratio (%)": "88.3", "Number of rRNAs": "1", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fibrobacter succinogenes subsp. succinogenes", "strain": "strain=S85", "accession": "GCA_000024665.1", "taxid": 834, "species_taxid": 833, "relation_to_type": "type", "validated": true, "ani": 79.57, "matched_fragments": 357, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrobacter succinogenes subsp. succinogenes", "strain": "strain=S85", "accession": "GCA_000146505.1", "taxid": 834, "species_taxid": 833, "relation_to_type": "type", "validated": true, "ani": 79.4504, "matched_fragments": 363, 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