{
    "type": "genome",
    "identifier": "GCA_902800715.1",
    "organism": "uncultured Bacteroidales bacterium",
    "title": "uncultured Bacteroidales bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902800715.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6152729",
        "wgs_master": "CADCFN000000000.1",
        "refseq_category": "na",
        "taxid": "194843",
        "species_taxid": "194843",
        "organism_name": "uncultured Bacteroidales bacterium",
        "infraspecific_name": "",
        "isolate": "RUG14590",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/17",
        "asm_name": "Rumen uncultured genome RUG14590",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/800/715/GCA_902800715.1_Rumen_uncultured_genome_RUG14590",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-17",
    "dateModified": "2020-02-17",
    "datePublished": "2020-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Bacteroidales bacterium"
        ],
        "sample_taxid": [
            "194843"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.940 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.62,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3298579",
        "Number of Sequences": "27",
        "Longest Sequences (bp)": "501233",
        "N50 (bp)": "178987",
        "Gap Ratio (%)": "0.000243",
        "GCcontent (%)": "50.9",
        "Number of CDSs": "2525",
        "Average Protein Length": "376.5",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sodaliphilus pleomorphus",
                "strain": "strain=Oil-RF-744-WCA-WT-10",
                "accession": "GCA_009676955.1",
                "taxid": 2606626,
                "species_taxid": 2606626,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8098,
                "matched_fragments": 143,
                "total_fragments": 1086,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sodaliphilus pleomorphus",
                "strain": "strain=Oil-RF-744-WCA-WT-10",
                "accession": "GCA_009696565.1",
                "taxid": 2606626,
                "species_taxid": 2606626,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7883,
                "matched_fragments": 140,
                "total_fragments": 1086,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Barnesiella viscericola",
                "strain": "strain=C46, DSM 18177",
                "accession": "GCA_000512915.1",
                "taxid": 397865,
                "species_taxid": 397865,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1776,
                "matched_fragments": 55,
                "total_fragments": 1086,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.62,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902800715.1",
                "gtdb_species": "s__Sodaliphilus sp902800715",
                "ani": 100.0,
                "matched_fragments": 1083,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.88",
                "min_intra_species_ani": "97.57",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902779125.1",
                "gtdb_species": "s__Sodaliphilus sp902779125",
                "ani": 92.7588,
                "matched_fragments": 883,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.25",
                "min_intra_species_ani": "97.06",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902792895.1",
                "gtdb_species": "s__Sodaliphilus sp902792895",
                "ani": 83.8421,
                "matched_fragments": 688,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017405965.1",
                "gtdb_species": "s__Sodaliphilus sp017405965",
                "ani": 83.114,
                "matched_fragments": 713,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900318205.1",
                "gtdb_species": "s__Sodaliphilus sp900318205",
                "ani": 83.0985,
                "matched_fragments": 689,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.32",
                "min_intra_species_ani": "95.50",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900318535.1",
                "gtdb_species": "s__Sodaliphilus sp900318535",
                "ani": 83.0676,
                "matched_fragments": 640,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.25",
                "min_intra_species_ani": "96.02",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCA_902782465.1",
                "gtdb_species": "s__Sodaliphilus sp902782465",
                "ani": 83.0628,
                "matched_fragments": 649,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.05",
                "min_intra_species_ani": "98.05",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902760865.1",
                "gtdb_species": "s__Sodaliphilus sp902760865",
                "ani": 83.0561,
                "matched_fragments": 685,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902793405.1",
                "gtdb_species": "s__Sodaliphilus sp902793405",
                "ani": 82.7316,
                "matched_fragments": 650,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.00",
                "min_intra_species_ani": "96.00",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902776955.1",
                "gtdb_species": "s__Sodaliphilus sp902776955",
                "ani": 82.7166,
                "matched_fragments": 643,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017557665.1",
                "gtdb_species": "s__Sodaliphilus sp017557665",
                "ani": 82.5324,
                "matched_fragments": 650,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902776435.1",
                "gtdb_species": "s__Sodaliphilus sp902776435",
                "ani": 82.5224,
                "matched_fragments": 668,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905233915.1",
                "gtdb_species": "s__Sodaliphilus sp905233915",
                "ani": 82.4068,
                "matched_fragments": 594,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900319525.1",
                "gtdb_species": "s__Sodaliphilus sp900319525",
                "ani": 82.382,
                "matched_fragments": 641,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "97.68",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_902774055.1",
                "gtdb_species": "s__Sodaliphilus sp902774055",
                "ani": 82.2835,
                "matched_fragments": 602,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902784675.1",
                "gtdb_species": "s__Sodaliphilus sp902784675",
                "ani": 82.2586,
                "matched_fragments": 530,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902772455.1",
                "gtdb_species": "s__Sodaliphilus sp902772455",
                "ani": 82.1004,
                "matched_fragments": 608,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017453505.1",
                "gtdb_species": "s__Sodaliphilus sp017453505",
                "ani": 82.0515,
                "matched_fragments": 552,
                "total_fragments": 1086,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.217,
        "cell_length": 0.157,
        "doubling_h": 0.206,
        "growth_tmp": 36.585,
        "optimum_tmp": 36.041,
        "optimum_ph": 7.086,
        "genome_size": 3658719.825,
        "gc_content": 44.947,
        "coding_genes": 3043.648,
        "rRNA16S_genes": 4.032,
        "tRNA_genes": 57.661,
        "gram_stain": 0.014,
        "sporulation": 0.0,
        "motility": 0.04,
        "range_salinity": 0.0,
        "facultative_respiration": 0.006,
        "anaerobic_respiration": 0.958,
        "aerobic_respiration": 0.034,
        "mesophilic_range_tmp": 0.985,
        "thermophilic_range_tmp": 0.014,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.95,
        "coccus_cell_shape": 0.024,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.024,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Muribaculaceae",
        "g__Sodaliphilus",
        "s__Sodaliphilus sp902800715"
    ],
    "_genome_taxon": [
        "uncultured",
        "Bacteroidales",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Muribaculaceae",
        "g__Sodaliphilus",
        "s__Sodaliphilus sp902800715",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Muribaculaceae",
        "Sodaliphilus",
        "Sodaliphilus",
        "sp902800715"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}