{ "type": "genome", "identifier": "GCA_902800945.1", "organism": "uncultured Erysipelotrichaceae bacterium", "title": "uncultured Erysipelotrichaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902800945.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6152759", "wgs_master": "CADCFX000000000.1", "refseq_category": "na", "taxid": "331630", "species_taxid": "331630", "organism_name": "uncultured Erysipelotrichaceae bacterium", "infraspecific_name": "", "isolate": "RUG14620", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/14", "asm_name": "Rumen uncultured genome RUG14620", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/800/945/GCA_902800945.1_Rumen_uncultured_genome_RUG14620", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-14", "dateModified": "2020-02-14", "datePublished": "2020-02-14", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Erysipelotrichaceae bacterium" ], "sample_taxid": [ "331630" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.394 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1418276", "Number of Sequences": "56", "Longest Sequences (bp)": "70470", "N50 (bp)": "37039", "Gap Ratio (%)": "0.008955", "GCcontent (%)": "30.0", "Number of CDSs": "1346", "Average Protein Length": "304.3", "Coding Ratio (%)": "86.6", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902800945.1", "gtdb_species": "s__Coprovivens sp902800945", "ani": 100.0, "matched_fragments": 442, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Coprovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_018711445.1", "gtdb_species": "s__Coprovivens excrementavium", "ani": 77.589, "matched_fragments": 60, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Coprovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017525015.1", "gtdb_species": "s__Coprovivens sp017525015", "ani": 77.5729, "matched_fragments": 50, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Coprovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900552975.1", "gtdb_species": "s__Coprovivens sp900552975", "ani": 77.4633, "matched_fragments": 55, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Coprovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002362595.1", "gtdb_species": "s__Coprovivens sp002362595", "ani": 77.1349, "matched_fragments": 55, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Coprovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "99.46", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_910584655.1", "gtdb_species": "s__Coprovivens sp910584655", "ani": 77.0612, "matched_fragments": 91, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Coprovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016296185.1", "gtdb_species": "s__Coprovivens sp016296185", "ani": 76.7016, "matched_fragments": 79, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Coprovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.333, "cell_length": 0.183, "doubling_h": null, "growth_tmp": 36.057, "optimum_tmp": 36.214, "optimum_ph": 7.27, "genome_size": 2715599.544, "gc_content": 38.082, "coding_genes": 2417.7, "rRNA16S_genes": 7.3, 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"\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }