{
    "type": "genome",
    "identifier": "GCA_902803175.1",
    "organism": "uncultured Butyrivibrio sp.",
    "title": "uncultured Butyrivibrio sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902803175.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6152982",
        "wgs_master": "CADCPB000000000.1",
        "refseq_category": "na",
        "taxid": "370801",
        "species_taxid": "370801",
        "organism_name": "uncultured Butyrivibrio sp.",
        "infraspecific_name": "",
        "isolate": "RUG14843",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/17",
        "asm_name": "Rumen uncultured genome RUG14843",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/803/175/GCA_902803175.1_Rumen_uncultured_genome_RUG14843",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-17",
    "dateModified": "2020-02-17",
    "datePublished": "2020-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Butyrivibrio sp."
        ],
        "sample_taxid": [
            "370801"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.956 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.62,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3381455",
        "Number of Sequences": "495",
        "Longest Sequences (bp)": "45792",
        "N50 (bp)": "8922",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.4",
        "Number of CDSs": "2535",
        "Average Protein Length": "342.0",
        "Coding Ratio (%)": "76.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Butyrivibrio fibrisolvens",
                "strain": "strain=DSM 3071",
                "accession": "GCA_900129945.1",
                "taxid": 831,
                "species_taxid": 831,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.5131,
                "matched_fragments": 149,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio proteoclasticus",
                "strain": "strain=B316",
                "accession": "GCA_000145035.1",
                "taxid": 43305,
                "species_taxid": 43305,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3336,
                "matched_fragments": 98,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.62,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000424545.1",
                "gtdb_species": "s__Butyrivibrio sp000424545",
                "ani": 99.3782,
                "matched_fragments": 772,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.41",
                "min_intra_species_ani": "99.38",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003175155.1",
                "gtdb_species": "s__Butyrivibrio fibrisolvens_C",
                "ani": 77.736,
                "matched_fragments": 139,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.87",
                "min_intra_species_ani": "96.32",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_000420945.1",
                "gtdb_species": "s__Butyrivibrio sp000420945",
                "ani": 77.7291,
                "matched_fragments": 77,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015056495.1",
                "gtdb_species": "s__Butyrivibrio sp015056495",
                "ani": 77.5457,
                "matched_fragments": 90,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.14",
                "min_intra_species_ani": "96.98",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900129945.1",
                "gtdb_species": "s__Butyrivibrio fibrisolvens",
                "ani": 77.5339,
                "matched_fragments": 148,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017433805.1",
                "gtdb_species": "s__Butyrivibrio sp017433805",
                "ani": 77.4565,
                "matched_fragments": 81,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900108105.1",
                "gtdb_species": "s__Butyrivibrio sp900108105",
                "ani": 77.3787,
                "matched_fragments": 97,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000424585.1",
                "gtdb_species": "s__Butyrivibrio sp000424585",
                "ani": 77.3272,
                "matched_fragments": 62,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000424385.1",
                "gtdb_species": "s__Butyrivibrio sp000424385",
                "ani": 77.2937,
                "matched_fragments": 90,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.60",
                "min_intra_species_ani": "98.60",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017635265.1",
                "gtdb_species": "s__Butyrivibrio sp017635265",
                "ani": 77.1974,
                "matched_fragments": 77,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000702265.1",
                "gtdb_species": "s__Butyrivibrio sp000702265",
                "ani": 77.1671,
                "matched_fragments": 92,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.58",
                "min_intra_species_ani": "97.58",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017446685.1",
                "gtdb_species": "s__Butyrivibrio sp017446685",
                "ani": 77.097,
                "matched_fragments": 76,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015056685.1",
                "gtdb_species": "s__Butyrivibrio sp015056685",
                "ani": 77.0451,
                "matched_fragments": 78,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
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                "mean_intra_species_ani": "95.83",
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                "mean_intra_species_af": "0.67",
                "min_intra_species_af": "0.67",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000423925.1",
                "gtdb_species": "s__Butyrivibrio sp000423925",
                "ani": 77.0291,
                "matched_fragments": 72,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017413105.1",
                "gtdb_species": "s__Butyrivibrio sp017413105",
                "ani": 76.7361,
                "matched_fragments": 71,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.176,
        "doubling_h": null,
        "growth_tmp": 37.333,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 3416203.151,
        "gc_content": 39.197,
        "coding_genes": 2950.0,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 48.0,
        "gram_stain": 0.666,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Butyrivibrio",
        "s__Butyrivibrio sp000424545"
    ],
    "_genome_taxon": [
        "uncultured",
        "Butyrivibrio",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Butyrivibrio",
        "s__Butyrivibrio sp000424545",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Butyrivibrio",
        "Butyrivibrio",
        "sp000424545"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}