{
    "type": "genome",
    "identifier": "GCA_902803515.1",
    "organism": "Oscillospiraceae bacterium",
    "title": "Oscillospiraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902803515.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6153023",
        "wgs_master": "CADCQN000000000.1",
        "refseq_category": "na",
        "taxid": "2485925",
        "species_taxid": "2485925",
        "organism_name": "Oscillospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "RUG14884",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG14884",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/803/515/GCA_902803515.1_Rumen_uncultured_genome_RUG14884",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oscillospiraceae bacterium"
        ],
        "sample_taxid": [
            "2485925"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.544 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 71.17,
        "contamination": 5.09,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1918966",
        "Number of Sequences": "344",
        "Longest Sequences (bp)": "25536",
        "N50 (bp)": "6759",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.1",
        "Number of CDSs": "1526",
        "Average Protein Length": "294.4",
        "Coding Ratio (%)": "70.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Clostridium phoceensis",
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                "accession": "GCA_001244495.1",
                "taxid": 1650661,
                "species_taxid": 1650661,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 64,
                "total_fragments": 454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoflavonifractor gallinarum",
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                "accession": "GCA_014982855.1",
                "taxid": 2779352,
                "species_taxid": 2779352,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2604,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavonifractor plautii",
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                "accession": "GCA_000239295.1",
                "taxid": 292800,
                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.0296,
                "matched_fragments": 75,
                "total_fragments": 454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavonifractor plautii",
                "strain": "strain=JCM 32125",
                "accession": "GCA_010508875.1",
                "taxid": 292800,
                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.9376,
                "matched_fragments": 75,
                "total_fragments": 454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysosmobacter acutus",
                "strain": "strain=MSJ-2",
                "accession": "GCA_018919205.1",
                "taxid": 2841504,
                "species_taxid": 2841504,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7289,
                "matched_fragments": 60,
                "total_fragments": 454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysosmobacter welbionis",
                "strain": "strain=J115",
                "accession": "GCA_005121165.3",
                "taxid": 2093857,
                "species_taxid": 2093857,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6697,
                "matched_fragments": 55,
                "total_fragments": 454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vescimonas coprocola",
                "strain": "strain=MM50",
                "accession": "GCA_018408575.1",
                "taxid": 2714355,
                "species_taxid": 2714355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4631,
                "matched_fragments": 56,
                "total_fragments": 454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporobacter termitidis",
                "strain": "strain=DSM 10068",
                "accession": "GCA_900130065.1",
                "taxid": 44749,
                "species_taxid": 44749,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4064,
                "matched_fragments": 69,
                "total_fragments": 454,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 71.17,
            "contamination": 5.09,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_900321335.1",
                "gtdb_species": "s__RUG678 sp900321335",
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                "matched_fragments": 330,
                "total_fragments": 454,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__RUG678",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017515345.1",
                "gtdb_species": "s__RGIG5705 sp017515345",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017519975.1",
                "gtdb_species": "s__Alloscillospira sp017519975",
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                "matched_fragments": 89,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Alloscillospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015068365.1",
                "gtdb_species": "s__RGIG7114 sp015068365",
                "ani": 77.4485,
                "matched_fragments": 85,
                "total_fragments": 454,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__RGIG7114",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014334055.1",
                "gtdb_species": "s__NSJ-62 sp014334055",
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                "matched_fragments": 57,
                "total_fragments": 454,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__NSJ-62",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_017477525.1",
                "gtdb_species": "s__RGIG7114 sp017477525",
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                "matched_fragments": 53,
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017428565.1",
                "gtdb_species": "s__Limivicinus sp017428565",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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            },
            {
                "accession": "GCA_017427645.1",
                "gtdb_species": "s__CAG-83 sp017427645",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-83",
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            {
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            },
            {
                "accession": "GCA_902778275.1",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.397,
        "doubling_h": null,
        "growth_tmp": 30.0,
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        "coding_genes": 4347.333,
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        "tRNA_genes": 61.0,
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        "motility": null,
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        "bacillus_cell_shape": 1.0,
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    "_gtdb_taxon": [
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    "_genome_taxon": [
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        "s__RUG678 sp900321335",
        "Bacteria",
        "Bacillota",
        "A",
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        "Oscillospirales",
        "Oscillospiraceae",
        "RUG678",
        "RUG678",
        "sp900321335"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}