{ "type": "genome", "identifier": "GCA_902805535.1", "organism": "uncultured Blastococcus sp.", "title": "uncultured Blastococcus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF VIENNA", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902805535.1", "bioproject": "PRJEB36534", "biosample": "SAMEA6526634", "wgs_master": "CADCTN000000000.1", "refseq_category": "na", "taxid": "217144", "species_taxid": "217144", "organism_name": "uncultured Blastococcus sp.", "infraspecific_name": "", "isolate": "AVDCRST_MAG52", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/30", "asm_name": "AVDCRST-MAG52", "submitter": "UNIVERSITY OF VIENNA", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/805/535/GCA_902805535.1_AVDCRST-MAG52", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-30", "dateModified": "2020-06-30", "datePublished": "2020-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Blastococcus sp." ], "sample_taxid": [ "217144" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Israel" ], "sample_host_location_id": [], "data_size": "0.913 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 82.1, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3446897", "Number of Sequences": "242", "Longest Sequences (bp)": "89143", "N50 (bp)": "23829", "Gap Ratio (%)": "0.007108", "GCcontent (%)": "73.4", "Number of CDSs": "3184", "Average Protein Length": "303.4", "Coding Ratio (%)": "84.1", "Number of rRNAs": "1", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blastococcus litoris", "strain": "strain=GP-S2-8", "accession": "GCA_003075095.1", "taxid": 2171622, "species_taxid": 2171622, "relation_to_type": "type", "validated": true, "ani": 85.4738, "matched_fragments": 804, "total_fragments": 1027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus colisei", "strain": "strain=DSM 46837", "accession": "GCA_006717095.1", "taxid": 1564162, "species_taxid": 1564162, "relation_to_type": "type", "validated": true, "ani": 85.3677, "matched_fragments": 814, "total_fragments": 1027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus aggregatus", "strain": "strain=DSM 4725", "accession": "GCA_900221005.1", "taxid": 38502, "species_taxid": 38502, "relation_to_type": "type", "validated": true, "ani": 83.3445, "matched_fragments": 722, "total_fragments": 1027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus saxobsidens", "strain": "strain=DSM 44509", "accession": "GCA_002938435.1", "taxid": 138336, "species_taxid": 138336, "relation_to_type": "type", "validated": true, "ani": 83.3385, "matched_fragments": 738, "total_fragments": 1027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus xanthinilyticus", "strain": "strain=DSM 46842", "accession": "GCA_008124835.1", "taxid": 1564164, "species_taxid": 1564164, "relation_to_type": "type", "validated": true, "ani": 83.3275, "matched_fragments": 761, "total_fragments": 1027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus saxobsidens", "strain": "strain=DSM 44509", "accession": "GCA_004217455.1", "taxid": 138336, "species_taxid": 138336, "relation_to_type": "type", "validated": true, "ani": 83.3165, "matched_fragments": 746, "total_fragments": 1027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus atacamensis", "strain": "strain=P6", "accession": "GCA_002938425.1", "taxid": 2070508, "species_taxid": 2070508, "relation_to_type": "type", "validated": true, "ani": 83.1003, "matched_fragments": 698, "total_fragments": 1027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus sabuli", "strain": "strain=DSM 46844", "accession": "GCA_900215145.1", "taxid": 1564158, "species_taxid": 1564158, "relation_to_type": "type", "validated": true, "ani": 82.6917, "matched_fragments": 734, "total_fragments": 1027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus sabuli", "strain": "strain=CECT 8820", "accession": "GCA_014191795.1", "taxid": 1564158, "species_taxid": 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