{ "type": "genome", "identifier": "GCA_902805565.1", "organism": "uncultured Corynebacteriales bacterium", "title": "uncultured Corynebacteriales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF VIENNA", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902805565.1", "bioproject": "PRJEB36534", "biosample": "SAMEA6526623", "wgs_master": "CADCTP000000000.1", "refseq_category": "na", "taxid": "581187", "species_taxid": "581187", "organism_name": "uncultured Corynebacteriales bacterium", "infraspecific_name": "", "isolate": "AVDCRST_MAG41", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/30", "asm_name": "AVDCRST-MAG41", "submitter": "UNIVERSITY OF VIENNA", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/805/565/GCA_902805565.1_AVDCRST-MAG41", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-30", "dateModified": "2020-06-30", "datePublished": "2020-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Corynebacteriales bacterium" ], "sample_taxid": [ "581187" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Israel" ], "sample_host_location_id": [], "data_size": "1.205 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.44, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4641038", "Number of Sequences": "460", "Longest Sequences (bp)": "63554", "N50 (bp)": "13848", "Gap Ratio (%)": "0.005818", "GCcontent (%)": "75.2", "Number of CDSs": "3965", "Average Protein Length": "310.7", "Coding Ratio (%)": "79.6", "Number of rRNAs": "1", "Number of tRNAs": "64", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Modestobacter versicolor", "strain": "strain=CP153-2", "accession": "GCA_003226595.1", "taxid": 429133, "species_taxid": 429133, "relation_to_type": "type", "validated": true, "ani": 77.6223, "matched_fragments": 495, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus siccatus", "strain": "strain=DSM 45419", "accession": "GCA_900103785.1", "taxid": 1137991, "species_taxid": 1137991, "relation_to_type": "type", "validated": true, "ani": 77.5561, "matched_fragments": 563, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter excelsi", "strain": "strain=1G6", "accession": "GCA_005930495.1", "taxid": 2213161, "species_taxid": 2213161, "relation_to_type": "type", "validated": true, "ani": 77.5019, "matched_fragments": 552, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter versicolor", "strain": "strain=DSM 16678", "accession": "GCA_014195485.1", "taxid": 429133, "species_taxid": 429133, "relation_to_type": "type", "validated": true, "ani": 77.4329, "matched_fragments": 596, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus pulveris", "strain": "strain=DSM 46839", "accession": "GCA_900188375.1", "taxid": 1564159, "species_taxid": 1564159, "relation_to_type": "type", "validated": true, "ani": 77.4082, "matched_fragments": 564, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus africanus", "strain": "strain=DSM 45422", "accession": "GCA_900107105.1", "taxid": 1137993, "species_taxid": 1137993, "relation_to_type": "type", "validated": true, "ani": 77.3548, "matched_fragments": 568, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus poikilotrophus", "strain": "strain=DSM 44209", "accession": "GCA_900111455.1", "taxid": 1333667, "species_taxid": 1333667, "relation_to_type": "type", "validated": true, "ani": 77.3321, "matched_fragments": 567, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus nigrescens", "strain": "strain=DSM 45408", "accession": "GCA_900129495.1", "taxid": 1070870, "species_taxid": 1070870, "relation_to_type": "type", "validated": true, "ani": 77.2837, "matched_fragments": 592, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus aggregatus", "strain": "strain=DSM 4725", "accession": "GCA_900221005.1", "taxid": 38502, "species_taxid": 38502, "relation_to_type": "type", "validated": true, "ani": 77.2827, "matched_fragments": 478, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klenkia brasiliensis", "strain": "strain=DSM 44526", "accession": "GCA_900100695.1", "taxid": 333142, "species_taxid": 333142, "relation_to_type": "type", "validated": true, "ani": 77.2507, "matched_fragments": 564, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter muralis", "strain": "strain=DSM 100205", "accession": "GCA_010686625.1", "taxid": 1608614, "species_taxid": 1608614, "relation_to_type": "type", "validated": true, "ani": 77.2283, "matched_fragments": 511, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter muralis", "strain": "strain=DSM 100205", "accession": "GCA_010682105.1", "taxid": 1608614, "species_taxid": 1608614, "relation_to_type": "type", "validated": true, "ani": 77.2101, "matched_fragments": 504, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klenkia soli", "strain": "strain=DSM 45843", "accession": "GCA_900103975.1", "taxid": 1052260, "species_taxid": 1052260, "relation_to_type": "type", "validated": true, "ani": 77.1987, "matched_fragments": 541, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptoalloteichus hindustanus", "strain": "strain=DSM 44523", "accession": "GCA_900129375.1", "taxid": 2017, "species_taxid": 2017, "relation_to_type": "type", "validated": true, "ani": 77.0422, "matched_fragments": 536, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix tamanrassetensis", "strain": "strain=CECT 8640", "accession": "GCA_014203665.1", "taxid": 1051531, "species_taxid": 1051531, "relation_to_type": "type", "validated": true, "ani": 76.9332, "matched_fragments": 526, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes nipponensis", "strain": "strain=NBRC 14063", "accession": "GCA_016862275.1", "taxid": 135950, "species_taxid": 135950, "relation_to_type": "type", "validated": true, "ani": 76.8215, "matched_fragments": 703, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pilimelia anulata", "strain": "strain=JCM 3090", "accession": "GCA_014647895.1", "taxid": 53371, "species_taxid": 53371, "relation_to_type": "type", "validated": true, "ani": 76.735, "matched_fragments": 609, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora rosea", "strain": "strain=NBRC 15558", "accession": "GCA_016863155.1", "taxid": 35762, "species_taxid": 35762, "relation_to_type": "type", "validated": true, "ani": 76.6951, "matched_fragments": 530, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora rosea", "strain": "strain=JCM 3166", "accession": "GCA_014648175.1", "taxid": 35762, "species_taxid": 35762, "relation_to_type": "type", "validated": true, "ani": 76.6774, "matched_fragments": 542, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora siamensis", "strain": "strain=NBRC 107568", "accession": "GCA_016863175.1", "taxid": 936338, "species_taxid": 936338, "relation_to_type": "type", "validated": true, "ani": 76.6413, "matched_fragments": 565, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryptosporangium phraense", "strain": "strain=A-T 5661", "accession": "GCA_006912135.1", "taxid": 2593070, "species_taxid": 2593070, "relation_to_type": "type", "validated": true, "ani": 76.6357, "matched_fragments": 593, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora chokoriensis", "strain": "strain=2-25(1)", "accession": "GCA_011297315.1", "taxid": 310353, "species_taxid": 310353, "relation_to_type": "type", "validated": true, "ani": 76.5455, "matched_fragments": 617, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea montanisoli", "strain": "strain=SMC 257", "accession": "GCA_013363975.1", "taxid": 2741721, "species_taxid": 2741721, "relation_to_type": "type", "validated": true, "ani": 76.5222, "matched_fragments": 591, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea wenchangensis", "strain": "strain=CGMCC 4.5598", "accession": "GCA_900111685.1", "taxid": 568860, "species_taxid": 568860, "relation_to_type": "type", "validated": true, "ani": 76.4932, "matched_fragments": 623, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis pretoriensis", "strain": "strain=NRRL B-24133", "accession": "GCA_002156025.1", "taxid": 218821, "species_taxid": 218821, "relation_to_type": "type", "validated": true, "ani": 76.329, "matched_fragments": 598, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis pretoriensis", "strain": "strain=DSM 44654", "accession": "GCA_900107925.1", "taxid": 218821, "species_taxid": 218821, "relation_to_type": "type", "validated": true, "ani": 76.3138, "matched_fragments": 613, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.44, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902805565.1", "gtdb_species": "s__CADCTP01 sp902805565", "ani": 100.0, "matched_fragments": 1303, "total_fragments": 1316, "gtdb_taxonomy": 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