{ "type": "genome", "identifier": "GCA_902805705.1", "organism": "uncultured Gemmatimonadaceae bacterium", "title": "uncultured Gemmatimonadaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF VIENNA", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902805705.1", "bioproject": "PRJEB36534", "biosample": "SAMEA6526593", "wgs_master": "CADCTU000000000.1", "refseq_category": "na", "taxid": "246130", "species_taxid": "246130", "organism_name": "uncultured Gemmatimonadaceae bacterium", "infraspecific_name": "", "isolate": "AVDCRST_MAG11", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/30", "asm_name": "AVDCRST-MAG11", "submitter": "UNIVERSITY OF VIENNA", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/805/705/GCA_902805705.1_AVDCRST-MAG11", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-30", "dateModified": "2020-06-30", "datePublished": "2020-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Gemmatimonadaceae bacterium" ], "sample_taxid": [ "246130" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Israel" ], "sample_host_location_id": [], "data_size": "1.046 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 69.37, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3962205", "Number of Sequences": "900", "Longest Sequences (bp)": "25173", "N50 (bp)": "5867", "Gap Ratio (%)": "0.009692", "GCcontent (%)": "74.4", "Number of CDSs": "2723", "Average Protein Length": "308.4", "Coding Ratio (%)": "63.6", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gemmatirosa kalamazoonensis", "strain": "strain=KBS708", "accession": "GCA_000522985.1", "taxid": 861299, "species_taxid": 861299, "relation_to_type": "type", "validated": true, "ani": 78.1991, "matched_fragments": 554, "total_fragments": 844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatimonas aurantiaca", "strain": "strain=T-27", "accession": "GCA_000010305.1", "taxid": 173480, "species_taxid": 173480, "relation_to_type": "type", "validated": true, "ani": 76.5317, "matched_fragments": 114, "total_fragments": 844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatimonas groenlandica", "strain": "strain=TET16", "accession": "GCA_013004105.1", "taxid": 2732249, "species_taxid": 2732249, "relation_to_type": "type", "validated": true, "ani": 76.191, "matched_fragments": 163, "total_fragments": 844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatimonas phototrophica", "strain": "strain=AP64", "accession": "GCA_000695095.2", "taxid": 1379270, "species_taxid": 1379270, "relation_to_type": "type", "validated": true, "ani": 76.1464, "matched_fragments": 103, "total_fragments": 844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=CB-286315", "accession": "GCA_013000925.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.7513, "matched_fragments": 188, "total_fragments": 844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 75.1338, "matched_fragments": 324, "total_fragments": 844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocaloribacter litoris", "strain": "strain=ISCAR-4553", "accession": "GCA_011682235.2", "taxid": 2558931, "species_taxid": 2558931, "relation_to_type": "type", "validated": true, "ani": 75.1203, "matched_fragments": 71, "total_fragments": 844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinobacterium chartae", "strain": "strain=DSM 21458", "accession": "GCA_014202645.1", "taxid": 521158, "species_taxid": 521158, "relation_to_type": "type", "validated": true, "ani": 74.9754, "matched_fragments": 58, "total_fragments": 844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter spongiae", "strain": 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