{ "type": "genome", "identifier": "GCA_902805795.1", "organism": "uncultured Nocardioidaceae bacterium", "title": "uncultured Nocardioidaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF VIENNA", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902805795.1", "bioproject": "PRJEB36534", "biosample": "SAMEA6526628", "wgs_master": "CADCUD000000000.1", "refseq_category": "na", "taxid": "253824", "species_taxid": "253824", "organism_name": "uncultured Nocardioidaceae bacterium", "infraspecific_name": "", "isolate": "AVDCRST_MAG46", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/30", "asm_name": "AVDCRST-MAG46", "submitter": "UNIVERSITY OF VIENNA", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/805/795/GCA_902805795.1_AVDCRST-MAG46", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-30", "dateModified": "2020-06-30", "datePublished": "2020-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Nocardioidaceae bacterium" ], "sample_taxid": [ "253824" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Israel" ], "sample_host_location_id": [], "data_size": "0.922 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 1.68, "strain_heterogeneity": 75.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3385883", "Number of Sequences": "260", "Longest Sequences (bp)": "103510", "N50 (bp)": "19562", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.2", "Number of CDSs": "3187", "Average Protein Length": "297.3", "Coding Ratio (%)": "83.9", "Number of rRNAs": "1", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_016907435.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 78.5011, "matched_fragments": 334, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 78.458, "matched_fragments": 303, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015339545.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 78.403, "matched_fragments": 337, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015070765.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 78.3628, "matched_fragments": 338, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides iriomotensis", "strain": "strain=NBRC 105384", "accession": "GCA_004168035.1", "taxid": 715784, "species_taxid": 715784, "relation_to_type": "type", "validated": true, "ani": 78.3561, "matched_fragments": 360, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 78.3016, "matched_fragments": 382, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides islandensis", "strain": "strain=KCTC 19275", "accession": "GCA_015352455.1", "taxid": 433663, "species_taxid": 433663, "relation_to_type": "type", "validated": true, "ani": 78.2508, "matched_fragments": 320, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides guangzhouensis", "strain": "strain=130", "accession": "GCA_004519545.1", "taxid": 2497878, "species_taxid": 2497878, "relation_to_type": "type", "validated": true, "ani": 78.2424, "matched_fragments": 330, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 78.2038, "matched_fragments": 348, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides allogilvus", "strain": "strain=KCTC 49020", "accession": "GCA_003047285.1", "taxid": 2072017, "species_taxid": 2072017, "relation_to_type": "type", "validated": true, "ani": 78.1524, "matched_fragments": 276, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides dongkuii", "strain": "strain=S-713", "accession": "GCA_014127485.1", "taxid": 2760089, "species_taxid": 2760089, "relation_to_type": "type", "validated": true, "ani": 78.1247, "matched_fragments": 358, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides glacieisoli", "strain": "strain=HLT3-15", "accession": "GCA_004137245.1", "taxid": 1168730, "species_taxid": 1168730, "relation_to_type": "type", "validated": true, "ani": 78.1115, "matched_fragments": 312, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lijunqiniae", "strain": "strain=S-531", "accession": "GCA_015024225.1", "taxid": 2760832, "species_taxid": 2760832, "relation_to_type": "type", "validated": true, "ani": 78.0961, "matched_fragments": 349, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola aurantiacus", "strain": "strain=DSM 12652", "accession": "GCA_003752505.1", "taxid": 86796, "species_taxid": 86796, "relation_to_type": "type", "validated": true, "ani": 78.0792, "matched_fragments": 325, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 78.0737, "matched_fragments": 311, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides kribbensis", "strain": "strain=DSM 16314", "accession": "GCA_015070375.1", "taxid": 305517, "species_taxid": 305517, "relation_to_type": "type", "validated": true, "ani": 78.0727, "matched_fragments": 347, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mumia flava", "strain": "strain=DSM 27763", "accession": "GCA_002797495.1", "taxid": 1348852, "species_taxid": 1348852, "relation_to_type": "type", "validated": true, "ani": 78.0527, "matched_fragments": 299, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola scoriae", "strain": "strain=DSM 22127", "accession": "GCA_900104965.1", "taxid": 642780, "species_taxid": 642780, "relation_to_type": "type", "validated": true, "ani": 78.0462, "matched_fragments": 329, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola aequoreus", "strain": "strain=NRRL B-24464", "accession": "GCA_000720335.1", "taxid": 397278, "species_taxid": 397278, "relation_to_type": "type", "validated": true, "ani": 78.024, "matched_fragments": 335, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides massiliensis", "strain": "strain=GD13", "accession": "GCA_900067705.2", "taxid": 1325935, "species_taxid": 1325935, "relation_to_type": "type", "validated": true, "ani": 78.0099, "matched_fragments": 239, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=CGMCC 4.7183", "accession": "GCA_014646035.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 77.9668, "matched_fragments": 334, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=SC8A-24", "accession": "GCA_014266025.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 77.9646, "matched_fragments": 328, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides antri", "strain": "strain=BN140041", "accession": "GCA_008373765.1", "taxid": 2607659, "species_taxid": 2607659, "relation_to_type": "type", "validated": true, "ani": 77.9116, "matched_fragments": 288, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides coralli", "strain": "strain=SCSIO 67246", "accession": "GCA_019880385.1", "taxid": 2872154, "species_taxid": 2872154, "relation_to_type": "type", "validated": true, "ani": 77.8744, "matched_fragments": 288, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides agariphilus", "strain": "strain=KCTC 19276", "accession": "GCA_015352445.1", "taxid": 433664, "species_taxid": 433664, "relation_to_type": "type", "validated": true, "ani": 77.8525, "matched_fragments": 293, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola ginsengisoli", "strain": "strain=Gsoil 097", "accession": "GCA_003725695.1", "taxid": 661483, "species_taxid": 661483, "relation_to_type": "type", "validated": true, "ani": 77.7084, "matched_fragments": 280, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides carbamazepini", "strain": "strain=CBZ_1", "accession": "GCA_024614185.1", "taxid": 2854259, "species_taxid": 2854259, "relation_to_type": "type", "validated": true, "ani": 77.6767, "matched_fragments": 317, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 1.68, "strain_heterogeneity": 75.0 }, "gtdb_result": [ { "accession": "GCF_014395785.1", "gtdb_species": "s__Nocardioides_B mesophilus", "ani": 78.4474, "matched_fragments": 346, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013698185.1", "gtdb_species": "s__JACCVL01 sp013698185", "ani": 78.415, "matched_fragments": 224, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__JACCVL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004168035.1", "gtdb_species": "s__Nocardioides_B iriomotensis", "ani": 78.4005, "matched_fragments": 355, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019039255.1", "gtdb_species": "s__JABFXA01 sp019039255", "ani": 78.3225, "matched_fragments": 380, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__JABFXA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004519545.1", "gtdb_species": "s__Nocardioides guangzhouensis", "ani": 78.2494, "matched_fragments": 330, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902805925.1", "gtdb_species": "s__Nocardioides sp902805925", "ani": 78.2351, "matched_fragments": 306, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013361955.1", "gtdb_species": "s__JABFXA01 sp013361955", "ani": 78.1951, "matched_fragments": 335, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__JABFXA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.75", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013409645.1", "gtdb_species": "s__Nocardioides panaciterrulae", "ani": 78.1842, "matched_fragments": 349, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009379735.1", "gtdb_species": "s__WHTB01 sp009379735", "ani": 78.1239, "matched_fragments": 294, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__WHTB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015024225.1", "gtdb_species": "s__Nocardioides sp015024225", "ani": 78.1156, "matched_fragments": 347, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.48", "min_intra_species_ani": "97.48", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002797495.1", "gtdb_species": "s__Mumia flava", "ani": 78.0999, "matched_fragments": 295, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Mumia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004522095.1", "gtdb_species": "s__Nocardioides sp004522095", "ani": 78.093, "matched_fragments": 343, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900104965.1", "gtdb_species": "s__Marmoricola scoriae", "ani": 78.0677, 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"total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013778305.1", "gtdb_species": "s__Nocardioides sp013778305", "ani": 78.0348, "matched_fragments": 339, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000720335.1", "gtdb_species": "s__Marmoricola aequoreus", "ani": 78.0304, "matched_fragments": 333, "total_fragments": 1009, 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